RnoEX6004975 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198392778-198395547:+
Coord C1 exon
chr1:198392778-198392941
Coord A exon
chr1:198394796-198394996
Coord C2 exon
chr1:198395409-198395547
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTGACCAACTCCTCTCTAGCCT
3' ss Score
5.17
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCTGATGGTGCGCTCAGGGGGAAGCCCCCTGTCCCCTGTGATTTATGACTCTGACATGGATGATGTCCCCGAGCGTGGCCTCATCAGTGACGCCCAGTCCCTCTACGTAGAACTGCTTTCAGAGACGCCAGCCAACCCCCTGCTGCTCAGCCTCCGGTTTGAAG
Seq A exon
CCTTTGAGGAGGATCGCTGCTTCCCGCCTTTCCTGGCACATGGCAATGTGACCACCACAGATCCTGAGTACCGCCCAGGGGCACTGGCCACCTTCTCATGCCTCCCAGGATATGCTCTGGAGCCACCAGGGCCCCCCAATGCTATTGAATGTGTGGATCCCACTGAACCCCACTGGAATGACACAGAGCCAGCCTGCAAGG
Seq C2 exon
CCATGTGTGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGTCCTGGCCAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'13-21,'13-17,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.262 C2=0.106
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(42.7=73.2)
A:
PF0008415=Sushi=WD(100=88.2)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGGTGCGCTCAGG
R:
TTTCAACTTGGAGCAAGATGC
Band lengths:
302-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]