DreEX0065592 @ danRer10
Exon Skipping
Gene
ENSDARG00000076052 | sez6l2
Description
seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
Coordinates
chr3:15100696-15105630:-
Coord C1 exon
chr3:15105467-15105630
Coord A exon
chr3:15103808-15104002
Coord C2 exon
chr3:15100696-15100834
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTACAACTTCTTTCTTTCAGCCT
3' ss Score
8.2
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCTGATTGTACGCAGTGGGAATAGCACGACAGCACCGCTCCTCTTCGACTCGGATCTGGATGATGTTCCGGAACGGGGCTTTGTGAGTGAAGGATCGTCTCTCTTTGTGGAGCTCACGGCAGATTCCTCCTCCATCCCACTGCTGCTGGCACTCCGCTATGAAG
Seq A exon
CCTTTGATGGTGAACACTGTTATGAACCTTACCTGCCTCATGGGAACTTCAGCAGCAGTGACATCACCTTCCCACTGGGAACTGTGGTATCGTTTTCATGTGCTGCTGGATTTGTGATGGAGCAGGGCTCAGGAGTTATGGAGTGTTTGGATCCCAATGACCCTCACTGGAACGAAACTGAACCGGTCTGCAGAG
Seq C2 exon
CTCTGTGTGGCGGTGAGCTCACAGATCCAGTGGGAACAGTGTTGTCTCCCGACTGGCCACAGAGCTACTCTAAAGGGCAGGACTGTGTGTGGCAAATACACGTCAGCGAGGACAAGCGCATCGAGCTGGATGTGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076052-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.021
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(43.8=82.1)
A:
PF0008415=Sushi=WD(100=87.9)
C2:
PF0043115=CUB=PU(40.4=93.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTGTACGCAGTGGGAA
R:
CACACACAGTCCTGCCCTTTA
Band lengths:
255-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]