BtaEX6110034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000704 | GUSB
Description
Bos taurus glucuronidase, beta (GUSB), mRNA. [Source:RefSeq mRNA;Acc:NM_001083436]
Coordinates
chr25:28168463-28170970:-
Coord C1 exon
chr25:28170792-28170970
Coord A exon
chr25:28170322-28170468
Coord C2 exon
chr25:28168463-28168547
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCTTGGCCTGCAGCGA
3' ss Score
10.17
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATCCGAGGGAAGGGCTTTGACTGGCCGCTGCTGGTGAAGGACTTCAACCTGCTTCGCTGGCTGGGCGCCAACGCTTTCCGCACCAGCCACTACCCCTATTCAGAGGAGGTGCTGCAGCTCTGTGACCGCTACGGGATCGTGGTCATCGACGAGAGCCCTGGTGTGGGCATCGTGCTGGT
Seq A exon
CGAGAGCTTCAGCAACGTGTCTCTGCAACACCACCTGGAGGTGATGGAGGAAATGATCCGCAGGGACAAGAATCACCCGGCCGTTGTAATGTGGTCCTTGGCCAATGAGCCCGCTTCCTTCCTGAAACCGGCTGGTTACTACTTCAA
Seq C2 exon
GACGCTGATTGCCCACACTAAAGCCCTGGACCCCTCCCGGCCCGTGACCTTTGTGACCAACACCAACTATGAAGCAGACCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000704-'9-10,'9-8,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAGGGAAGGGCTTTGA
R:
GTGTTGGTCACAAAGGTCACG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]