GgaEX6017213 @ galGal4
Exon Skipping
Gene
ENSGALG00000002542 | GUSB
Description
beta-glucuronidase precursor [Source:RefSeq peptide;Acc:NP_001034405]
Coordinates
chr19:4925123-4927057:-
Coord C1 exon
chr19:4926879-4927057
Coord A exon
chr19:4926096-4926242
Coord C2 exon
chr19:4925123-4925207
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAGTCTTGTTTCCTTTTCAGTGA
3' ss Score
7.96
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTCGTGGCAAAGGCCTGGACTGGGCACTGATCGTTAAGGACTTCAACCTGCTGCGCTGGTTGGGGGCAAACTCCTTCCGTACCAGCCACTACCCCTATGCTGAGGAGATCATGGACCTGTGTGACACCTACGGCATCGTGGTGATTGATGAGTGCCCGGGAGTGGGGATTAAGATGCC
Seq A exon
TGAGAGCTTTGGGAACAAATCTCTACAGCATCATCTCGTTGTGATGGAGGAACTGATCCGCAGGGATAAGAACAGGCCCTCAGTTGTGATGTGGTCAGTAGCCAATGAGCCGGCATCAGAGCTGCCCCCAGCAGCTTACTACTTCAA
Seq C2 exon
GACACTGATAGCTCACACTAAAGCTCTGGATCCCTCCAGACCTGTAACGTTTGTGTCTGATACTAATTACGCTGTTGATCATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542-'15-10,'15-8,17-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGGGCACTGATCGTTA
R:
ACCATGATCAACAGCGTAATTAGT
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]