MmuEX6021308 @ mm10
Exon Skipping
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:129995447-129998195:-
Coord C1 exon
chr5:129998017-129998195
Coord A exon
chr5:129997780-129997926
Coord C2 exon
chr5:129995447-129995531
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTCTGCCTCCACAGTCA
3' ss Score
11.18
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATCCGAGGGAAAGGCTTCGACTGGCCGCTGCTGGTAAAGGATTTCAACCTGCTCCGTTGGCTCGGGGCAAATTCCTTTCGTACCAGCCACTATCCCTACTCAGAGGAGGTACTTCAGCTCTGTGACCGATACGGGATTGTGGTCATCGATGAGTGTCCCGGTGTGGGCATTGTGCTACC
Seq A exon
TCAGAGTTTTGGCAACGAGTCACTTCGGCACCACCTAGAGGTGATGGAGGAGCTGGTTCGCCGGGACAAAAATCACCCTGCGGTTGTGATGTGGTCTGTGGCCAATGAGCCTTCCTCTGCTCTGAAACCCGCCGCATATTACTTTAA
Seq C2 exon
GACGCTGATCACCCACACCAAAGCCCTGGACCTCACCCGTCCCGTGACCTTTGTGAGCAACGCCAAATATGATGCAGACCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534-'14-12,'14-8,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAGGGAAAGGCTTCGA
R:
TTTGGCGTTGCTCACAAAGGT
Band lengths:
246-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types