RnoEX6064104 @ rn6
Exon Skipping
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30207078-30210501:+
Coord C1 exon
chr12:30207078-30207256
Coord A exon
chr12:30207355-30207501
Coord C2 exon
chr12:30210417-30210501
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTCTTGCTCCACAGCCA
3' ss Score
11.54
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATCCGAGGGAGAGGCTTCGACTGGCCTCTGCTGATAAAGGATTTCAACCTCCTCCGTTGGCTCGGGGCAAATTCCTTTCGTACCAGCCACTATCCCTACTCGGAGGAGGTACTTCAGCTCTGTGACCGATATGGAATTGTGGTCATCGATGAGTGTCCCGGTGTGGGCATCGTGCTGCC
Seq A exon
CCAGAGTTTTGGCAACGTGTCTCTTCGGCACCACCTAGAGGTGATGGACGAGCTGGTGCGCAGGGACAAAAATCACCCTGCGGTCGTGATGTGGTCTGTGGCCAATGAGCCTGTCTCTTCTCTGAAACCTGCCGGATATTACTTCAA
Seq C2 exon
GACGCTGATCGCCCACACCAAAGCCCTGGACCCCACCCGTCCTGTGACCTTTGTGAGCAATACCAGATATGACGCAGACCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913-'8-11,'8-8,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTGGCCTCTGCTGATAA
R:
CCCCAGGTCTGCGTCATATCT
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]