DmeEX6012006 @ dm6
Exon Skipping
Gene
FBgn0034417 | CG15117
Description
This gene is referred to in FlyBase by the symbol DmelCG15117 (FBgn0034417). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (5 unique). Gene sequence location is 2R:19122231..19129300. Its molecular function is described by: carbohydrate binding; beta-glucuronidase activity. It is involved in the biological process described with: glucuronoside catabolic process; multicellular organism reproduction. 9 alleles are reported. The phenotypes of these alleles manifest in: trichogen cell; mesothoracic tergum. The phenotypic classes of alleles include: partially lethal - majority die; some die during pupal stage; fertile; visible; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages, in adult male stages.
Coordinates
chr2R:19123148-19124036:-
Coord C1 exon
chr2R:19123499-19124036
Coord A exon
chr2R:19123295-19123438
Coord C2 exon
chr2R:19123148-19123232
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTCTTGGCTTCGATTTTCAGAAA
3' ss Score
8.04
5' ss Seq
TGAGTGGGT
5' ss Score
-0.56
Exon sequences
Seq C1 exon
GCTGCCAACGAGGCAGATAATGTCTTGCAAATCCAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAATGCCACGTCGGACCAAAAACTTGGCGGCAAGCTGCAAGTGAACCCGGTGAAGCCCTGGTGGCCCTACCTAATGCATTCCGAACCGGGTTATCTGTACCAGCTGGAGATCAAATTGCTGGCGACCAACGATGAGCTCCTGGATGTCTACCGACTGAAAGTGGGAATACGCACACTAAGTTGGAACAGCCAGCAGTTCCTGATCAACGGCAAGCCCGTTTACTTCCGTGGTTTTGGACGACACGAAGATTCGGATATCAGGGGTAAGGGTCTGGACAATGCACTGATGGTGCGCGATTTCAATCTGCTCAAGTGGATTGGAGCGAATGCGTATCGCACGTCGCATTATCCCTACTCCGAGGAGTCCATGCAGTTTGCGGATGAGCACGGCATCATGATCATCGACGAATGTCCCAGTGTGGATACAGA
Seq A exon
AAACTTTAGCCAGGAGCTGCTGGGCAAGCACAAATCGTCGCTGGAGCAGCTCATCCATCGGGATCGGAATCATCCAAGTGTGGTGATGTGGTCCATTGCCAATGAACCCCGGACTGGTAGCGTGAGTGCGGATTCGTACTTTGA
Seq C2 exon
ATTAGTGGCCAACTTCACACGGTCTCTGGATAAAACCCGACCCATCACGGCTGCCATTGCTGTTTCAAACACCCAGGATAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0034417-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=PD(83.8=51.7),PF0283612=Glyco_hydro_2_C=PU(28.1=46.7)
A:
PF0283612=Glyco_hydro_2_C=FE(16.1=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(9.4=100)
Main Inclusion Isoform:
FBpp0085778
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0085777, FBpp0099475, FBpp0309399, FBpp0309400, FBpp0309401
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCTGATCAACGGCAAGC
R:
CCGTGTGAAGTTGGCCACTAA
Band lengths:
257-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)