DreEX0036731 @ danRer10
Exon Skipping
Gene
ENSDARG00000063126 | gusb
Description
glucuronidase, beta [Source:ZFIN;Acc:ZDB-GENE-070705-256]
Coordinates
chr5:1816688-1820906:-
Coord C1 exon
chr5:1820728-1820906
Coord A exon
chr5:1820238-1820384
Coord C2 exon
chr5:1816688-1816772
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCGTGTGTGTCTCAGACG
3' ss Score
8.67
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
ATTCGAGGGAAAGGCTTCGACTGGCCTCTGGTGGTGAAGGATTTTAACCTGATGAAGTGGATGGGAGCCAACTCCTTCCGCACCAGCCACTATCCGTACGCTGAGGAGATCCTGCAGACGGCGGATCGACACGGCATCGTCATCATCGACGAGTGTCCGGGAGTCGGCATTAAAGACAT
Seq A exon
ACGCAGTTTCGGTAATGTTTCTCTGGCTCATCATCTGACCGTGATGGAGGAGCTGGTCAGACGTGATAAAAACCATCCGTCTGTGGTCATGTGGTCGGTGGCCAATGAGCCGGCGTCTGAAATGCCGCCTGCGGGACTCTACTTTAA
Seq C2 exon
GGAGCTGATCTCTCATACGAAGTCTCTGGATTCCAGTCGTCCCGTCACATTTATTACTGACAGCAACTACGCCAGAGATCAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063126-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(19.5=100)
A:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGGGAAAGGCTTCGACT
R:
CTCTGGCGTAGTTGCTGTCAG
Band lengths:
255-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]