BtaEX6110044 @ bosTau6
Exon Skipping
Description
Bos taurus argininosuccinate lyase (ASL), mRNA. [Source:RefSeq mRNA;Acc:NM_001034428]
Coordinates
chr25:28249396-28249963:-
Coord C1 exon
chr25:28249879-28249963
Coord A exon
chr25:28249722-28249781
Coord C2 exon
chr25:28249396-28249479
Length
60 bp
Sequences
Splice sites
3' ss Seq
AGTCCTCCCTTTCCCCGCAGTGT
3' ss Score
11.2
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
CACCGGAAGCAGTCTGATGCCCCAGAAGAAAAACCCAGACAGCCTGGAGCTGATCCGGAGCAAGGCGGGGCGAGTGTTTGGGCGG
Seq A exon
TGTGCTGGGCTCCTGATGACACTCAAGGGACTTCCGAGCACCTACAACAAGGACTTACAG
Seq C2 exon
GAAGACAAGGAAGCCGTGTTTGAAGTGTCCGACACCATGAGCGCTGTCCTCCAAGTGGCCACTGGTGTCATCTCTACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015314-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PD(9.2=93.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCAGAAGAAAAACCCAG
R:
TAGAGATGACACCAGTGGCCA
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]