DreEX0015254 @ danRer10
Exon Skipping
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31229731-31234812:+
Coord C1 exon
chr21:31229731-31229815
Coord A exon
chr21:31234584-31234643
Coord C2 exon
chr21:31234729-31234812
Length
60 bp
Sequences
Splice sites
3' ss Seq
CAAATCTCATTTTAATTCAGTGT
3' ss Score
4.98
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CACTGGGAGCAGTTTAATGCCTCAGAAGAAGAACGCAGACAGCCTGGAGCTCATCCGCAGCAAAGCAGGACGAGTGTTTGGAAGA
Seq A exon
TGTGCAGGCTTTCTGATGACACTCAAAGGCTTACCAAGCACGTACAACAAGGACTTACAG
Seq C2 exon
GAGGATAAAGAAGCCATGTTTGATACATATGATACTGTACACGCTGTGCTGCAGGTGGCGACAGGCGTCATCTCAACTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PD(9.2=93.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGAACGCAGACAGCCTG
R:
AGAGTTGAGATGACGCCTGTC
Band lengths:
140-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]