MmuEX6021319 @ mm9
Exon Skipping
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130488527-130489123:-
Coord C1 exon
chr5:130489039-130489123
Coord A exon
chr5:130488867-130488926
Coord C2 exon
chr5:130488527-130488610
Length
60 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCACTCCCCCTGCAGTGT
3' ss Score
7.54
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CACCGGAAGCAGCTTGATGCCCCAGAAGAAAAACCCAGACAGCCTGGAGCTGATCCGGAGCAAGGCGGGCCGAGTGTTTGGACGG
Seq A exon
TGTGCCGGACTCCTGATGACCCTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAG
Seq C2 exon
GAAGACAAGGAGGCTGTGTTTGAAGTGTCTGACACCATGATAGCTGTCCTCCAAGTGGCCACTGGAGTCATCTCTACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-'18-28,'18-27,19-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PD(25.0=93.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCAGAAGAAAAACCCAG
R:
GATGACTCCAGTGGCCACTTG
Band lengths:
140-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: