HsaEX0017161 @ hg19
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:17888]
Coordinates
chr7:65554078-65554682:+
Coord C1 exon
chr7:65554078-65554162
Coord A exon
chr7:65554263-65554322
Coord C2 exon
chr7:65554599-65554682
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCCCTCTTCCCGCAGTGT
3' ss Score
12.06
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
CACGGGAAGCAGCCTGATGCCCCAGAAGAAAAACCCCGACAGTTTGGAGCTGATCCGGAGCAAGGCTGGGCGTGTGTTTGGGCGG
Seq A exon
TGTGCCGGGCTCCTGATGACCCTCAAGGGACTTCCCAGCACCTACAACAAAGACTTACAG
Seq C2 exon
GAGGACAAGGAAGCTGTGTTTGAAGTGTCAGACACTATGAGTGCCGTGCTCCAGGTGGCCACTGGCGTCATCTCTACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGAAGAAAAACCCCGAC
R:
GTAGAGATGACGCCAGTGGC
Band lengths:
143-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)