HsaEX0017161 @ hg38
Exon Skipping
Gene
ENSG00000126522 | ASL
Description
argininosuccinate lyase [Source:HGNC Symbol;Acc:HGNC:746]
Coordinates
chr7:66089091-66089695:+
Coord C1 exon
chr7:66089091-66089175
Coord A exon
chr7:66089276-66089335
Coord C2 exon
chr7:66089612-66089695
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTGCCTCCCTCTTCCCGCAGTGT
3' ss Score
12.06
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
CACGGGAAGCAGCCTGATGCCCCAGAAGAAAAACCCCGACAGTTTGGAGCTGATCCGGAGCAAGGCTGGGCGTGTGTTTGGGCGG
Seq A exon
TGTGCCGGGCTCCTGATGACCCTCAAGGGACTTCCCAGCACCTACAACAAAGACTTACAG
Seq C2 exon
GAGGACAAGGAAGCTGTGTTTGAAGTGTCAGACACTATGAGTGCCGTGCTCCAGGTGGCCACTGGCGTCATCTCTACGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126522_MULTIEX3-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PD(11.2=90.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGAAGAAAAACCCCGAC
R:
GTAGAGATGACGCCAGTGGC
Band lengths:
143-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development