RnoEX6064096 @ rn6
Exon Skipping
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30176611-30177190:+
Coord C1 exon
chr12:30176611-30176695
Coord A exon
chr12:30176811-30176870
Coord C2 exon
chr12:30177107-30177190
Length
60 bp
Sequences
Splice sites
3' ss Seq
CAGCGTCACTCTCCCCTTAGTGC
3' ss Score
8.06
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CACCGGAAGCAGCTTGATGCCCCAGAAGAAAAACCCAGACAGCTTGGAGCTGATCCGGAGCAAGGCGGGCCGAGTGTTTGGACGG
Seq A exon
TGCGCAGGACTCCTGATGACCCTCAAGGGACTTCCAAGCACCTACAACAAGGACTTACAG
Seq C2 exon
GAAGACAAGGAGGCTGTGTTTGAAGTGTCTGACACCATGACAGCTGTCCTCCAAGTAGCCACTGGAGTCATCTCTACACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=PD(9.2=93.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCAGAAGAAAAACCCAG
R:
CTCCAGTGGCTACTTGGAGGA
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]