BtaEX6110180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33596288-33602287:-
Coord C1 exon
chr25:33601737-33602287
Coord A exon
chr25:33597938-33598062
Coord C2 exon
chr25:33596288-33596501
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCTGTGTGCCAACAGGTT
3' ss Score
10.9
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCCCCGAGAAGCCCGGCGCCAAGGCGGCCGAGGTGGGCGACGAGTTCGCCGGGGACTTCGTGGTGGGCGAGCGTGTGTGGGTGAACGGCGTGAAGCCGGGCGTGGTGCAGTACCTGGGGGAGACGCAGTTCGCGCCGGGCCAGTGGGCGGGCGTGGTGCTGGACGAGCCGGTGGGCAAGAACGACGGCGCGGTGGGCGGCGTGCGCTACTTCGAGTGCCCGGCCCTGCAGGGCATCTTCACGCGGCCCTCCAAGCTCACGCGGCAGCCCGCGGCCGAGGGCTCTGGCAGCGACGCCCATTCGGTCGAGTCGCTGACCGCCCAGAACCTGTCGCTGCACTCGGGCACCGCCACGCCGCCGCTCACCAGCCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCTCGGTCAAGACCGGCAACGAGTCGGGCTCCAACCTCTCGGACAGCGGCTCCGTGAAACGCGGCGACAAGGACCTGCGCCTCGGAGACCGCGTGCTG
Seq A exon
GTTGGTGGGACGAAGACTGGCGTGGTGCGGTATGTGGGGGAGACAGACTTTGCCAAGGGCGAGTGGTGTGGCGTGGAACTGGACGAGCCCCTTGGGAAGAACGATGGGGCGGTGGCGGGCACCAG
Seq C2 exon
GTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTTGCACCCATCCACAAGGTGATCCGCATCGGCTTCCCATCCACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTATGGCCATGGGTGTGTCGGCGCTGACCCACAGTCCCAGCAGCTCCTCCATCAGCTCTGTCAGCTCTGTGGCCTCCTCCGTGGGTGGCCGGCCCAGCCGCAGTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875-'1-6,'1-4,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=0.048 C2=0.403
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=35.9),PF0130220=CAP_GLY=PU(7.6=2.7)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCGGTCGAGTCGCTGAC
R:
ACCTTGTGGATGGGTGCAAAG
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]