DreEX6013885 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58750239-58775006:+
Coord C1 exon
chr5:58750239-58750753
Coord A exon
chr5:58766765-58766889
Coord C2 exon
chr5:58774793-58775006
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTTCTCTCTTCTCAGGTT
3' ss Score
12.19
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGACGACTCCCACCCCAAGCAGCAATGCCTCAGACAAGTCCAGCTCCAAAGCCTCTGAGGTTGGCGACGAGGTGGCCGGCGACTTTGTAGTCGGTGAACGTGTCTGGGTGAACGGAGTCAAGCCGGGAGTCATTGCCTACCTTGGAGAGACCCAGTTTTCCCCGGGACAGTGGGCGGGAGTGGTGCTGAATGATCTGGTTGGAAAAAACGATGGCTCTGTCAATGGCGTGCGCTACTTCGAGTGCCAGGCTTTGCAGGGCATCTTCACGAGGCCTTCTAAGCTCACACGCCAACCCATTGGAGACGGGAGCGATGAGCAGCAGAACGCACAGCTCCAAGGTGGAGCAGGAGCTTCCGGACAGCGCGTGGTCATGCCGCTCAGAGAAGGCATGCTTAACAGCTCTGTCAAAACCGGCAACGAGTCCGGATCCAACATGTCTGACAGTGGATCGGTGAAGAAAGGTGGAGAGAAGGACCTAAAAGTTGGAGATCGTGTGCTG
Seq A exon
GTTGGCGGCACTAAAACAGGAGTGGTGCGTTATGTGGGAGAGACTGACTTTGCCAAGGGCGAGTGGTGTGGAGTGGAGCTGGACGAGCCGTTAGGGAAAAACGATGGAGCTGTTGCTGGAACCAG
Seq C2 exon
ATATTTCCAGTGCCCACCCAAGTTTGGCCTCTTTGCTCCAATCCACAAGGTGATTCGCATCGGCTTCCCGTCCACCAGTCCAGCTAAAGCTAAGAAGAGCAAGCGTATGGCGATGGGTGTGTCGTCTCTGGCCCACAGCCCCTCCAGTTCCTCCATCAGCTCTGTCAGCTCTGTGGCGTCCAGCGTTGGAGGCCGTCCCAGCCGCACAGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596-'5-7,'5-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=0.046 C2=0.416
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=38.4),PF0130220=CAP_GLY=PU(7.6=2.9)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=25.0),PF041569=IncA=PU(22.0=48.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCCGGATCCAACATGTC
R:
AGCTGATGGAGGAACTGGAGG
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]