RnoEX0021807 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25202371-25208362:+
Coord C1 exon
chr12:25202371-25202927
Coord A exon
chr12:25207283-25207407
Coord C2 exon
chr12:25208149-25208362
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCATGTGCCAACAGGTT
3' ss Score
9.83
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCTCCGAGAAGCCAGGTCCAAAGGCAGCCGAAGTGGGTGATGACTTCTTGGGAGACTTCGTGGTGGGCGAGAGGGTGTGGGTGAATGGCGTGAAGCCCGGCGTGGTGCAGTACCTGGGTGAGACACAGTTTGCGCCAGGCCAGTGGGCCGGCGTGGTCTTGGATGATCCTGTGGGCAAGAACGATGGAGCTGTGGGTGGCGTGCGCTACTTCGAGTGCCCAGCTCTACAGGGCATCTTCACACGGCCCTCCAAGCTGACCCGCCAGCCCGCAGCTGAGGGCTCCGGCAGTGACGCCCACTCAGTGGAATCCCTCACCGCCCAGAACCTGTCCCTGCATTCTGGCACGGCCACGCCCCCACTCACCGGCCGAGTCATCCCCCTGCGGGAGAGTGTTCTCAACAGCTCCGTGAAGACGGGCAATGAGTCTGGCTCCAACCTCTCGGACAGTGGTTCTGTGAAGCGTGGTGACAAGGACCTCCACCTGGGAGACCGTGTGCTG
Seq A exon
GTTGGTGGGACGAAGACCGGTGTGGTACGATATGTTGGGGAGACGGACTTTGCCAAAGGCGAGTGGTGTGGTGTGGAGCTGGACGAGCCCCTTGGGAAGAACGATGGGGCAGTGGCAGGCACCAG
Seq C2 exon
GTACTTCCAGTGCCCACCCAAGTTCGGTCTCTTTGCACCAATCCACAAGGTCATCCGAATTGGCTTCCCATCTACCAGTCCAGCCAAGGCCAAGAAGACCAAGCGCATGGCTATGGGTGTCTCAGCCTTGACCCACAGCCCCAGCAGTTCTTCCATCAGCTCTGTCAGCTCTGTGGCCTCCTCTGTTGGTGGCCGGCCGAGCCGTAGTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.048 C2=0.403
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGGGCAATGAGTCTGG
R:
GCTGATGGAAGAACTGCTGGG
Band lengths:
251-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]