HsaEX0015680 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73752778-73770953:+
Coord C1 exon
chr7:73752778-73753334
Coord A exon
chr7:73768210-73768334
Coord C2 exon
chr7:73770740-73770953
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTGTGTGCCGACAGGTT
3' ss Score
10.21
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CCCCCGAGAAGCCGGGCCCCAAGGCGGCGGAAGTGGGGGATGACTTCCTGGGGGACTTTGTGGTGGGCGAGCGGGTGTGGGTGAACGGCGTGAAGCCAGGCGTGGTGCAGTATCTGGGAGAGACGCAGTTCGCACCGGGCCAGTGGGCTGGCGTGGTGCTGGACGACCCGGTGGGCAAGAATGATGGCGCGGTGGGCGGCGTGCGCTACTTCGAGTGCCCGGCCCTCCAGGGTATCTTCACGCGGCCCTCCAAGCTGACCCGGCAGCCCACGGCCGAGGGCTCGGGGAGTGATGCCCACTCCGTGGAGTCGCTGACTGCCCAGAACCTGTCATTGCATTCGGGCACGGCCACGCCCCCGCTGACCAGCCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCTCCGTGAAGACTGGCAACGAGTCGGGATCCAACCTCTCAGACAGCGGCTCTGTGAAGCGGGGCGAAAAGGACCTGCGCCTGGGGGACCGCGTGCTG
Seq A exon
GTTGGCGGGACGAAGACTGGCGTGGTGCGGTACGTGGGGGAGACAGACTTTGCCAAGGGCGAGTGGTGTGGCGTGGAGCTGGACGAGCCCCTTGGGAAGAATGATGGGGCGGTGGCGGGCACCAG
Seq C2 exon
GTACTTCCAGTGCCCACCCAAGTTTGGTCTCTTCGCGCCCATCCACAAAGTGATCCGTATCGGCTTCCCATCTACCAGCCCAGCCAAGGCCAAGAAGACCAAGCGTATGGCCATGGGTGTGTCAGCACTGACCCACAGTCCCAGCAGTTCCTCCATCAGCTCCGTCAGCTCTGTGGCCTCCTCCGTGGGGGGTCGGCCCAGCCGCAGTGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.548 A=0.048 C2=0.403
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=25.0),PF116003=CAF-1_p150=PU(23.3=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAACCTGTCATTGCAT
R:
ATGGGAAGCCGATACGGATCA
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)