GgaEX6016944 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2758884-2769812:-
Coord C1 exon
chr19:2769274-2769812
Coord A exon
chr19:2761920-2762044
Coord C2 exon
chr19:2758884-2759097
Length
125 bp
Sequences
Splice sites
3' ss Seq
CATCATTTTATCCCCATCAGGTC
3' ss Score
7.92
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCGCCGACAAGTCGGGATCGAAGGCCGCCGAGGTGGGCGATGACTTCCTGGGAGACTTTGTGGTGGGCGAACGCGTCTGGGTGAACGGAGTGAAGCCGGGAGTGATCCAATACCTTGGGGAGACACAATTTGCTCCGGGCCAGTGGGCGGGGGTCGTGCTGGATGACCCCGTGGGTAAGAACGATGGCTCCGTCGGAGGCGTGCGCTACTTCGAGTGCCAACCGCTGCAGGGCATTTTCACGCGGCCGTCCAAGCTGACGCGGCAGCCCGTGGCTGAGGGCTCTGGGAGCGACGTCCCCTCCGTGGATTCGCTTACAGCTCAGAACTTGTCCCTGCACTCGGGGACGGCCACGCCGCCGCTCTCCACTCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCGCCATGAAGACGGGCAACGAGTCGGGATCCAACCTGTCGGACAGCGGGTCTGTGAAGAAAGGGGAGAAGGACCTGCGGCTCGGAGACCGCGTGCTG
Seq A exon
GTCGGTGGGACGAAGACGGGAGTTGTGCGCTACGTGGGAGAGACAGACTTTGCCAAAGGAGAGTGGTGTGGCGTGGAGCTGGATGAGCCCCTGGGGAAGAACGATGGGGCTGTGGCTGGAACAAG
Seq C2 exon
GTATTTTCAGTGCCCTCCCAAGTTTGGCCTCTTTGCTCCCATCCACAAGGTGATTCGGATTGGGTTTCCATCAACCAGCCCTGCCAAGGCGAAGAAGAGCAAGCGGATGGCCATGGGAGTGTCTGCCCTCACCCACAGCCCCAGCAGCTCTTCCATCAGCTCCGTCAGCTCCGTGGCTTCCTCTGTTGGGGGCAGACCTAGCCGCAGTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.472 A=0.048 C2=0.403
Domain overlap (PFAM):
C1:
PF0130220=CAP_GLY=WD(100=36.7),PF0130220=CAP_GLY=PU(7.6=2.8)
A:
PF0130220=CAP_GLY=FE(62.1=100)
C2:
PF0130220=CAP_GLY=PD(27.3=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCAGAACTTGTCCCTGC
R:
CCGAATCACCTTGTGGATGGG
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]