BtaEX6110187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33576701-33580816:-
Coord C1 exon
chr25:33580759-33580816
Coord A exon
chr25:33577966-33578049
Coord C2 exon
chr25:33576701-33576857
Length
84 bp
Sequences
Splice sites
3' ss Seq
CATCTCTCCCTTCTCCCCAGGCC
3' ss Score
11.25
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGATTGAGTCCAACGACATTTCAGGGGAGAAGATCAGGATGAAGGAGACTGTGGAGG
Seq A exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTAACATCTCAGACCGAGATGCTCAGGGCCCAAGTAAGTG
Seq C2 exon
CACTGGAGAGCAAGTGCAGGTCGGGCGAAAAGAAGGTGGACACCCTCCAGAAAGAGAAGCGGCGCTTGGAGGCGGAGCTAGAGGCCGTGTCCCGGAAGACCCATGATGCCTCGGGCCAGCTGGTCCTCATCAGCCAGGAGCTGCTCCGGAAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875-'13-15,'13-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=0.655 C2=0.358
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCCAACGACATTTCAGGG
R:
CCGAGGCATCATGGGTCTTC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]