HsaEX0015676 @ hg38
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-Gly domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr7:74380806-74389259:+
Coord C1 exon
chr7:74380806-74380863
Coord A exon
chr7:74386521-74386604
Coord C2 exon
chr7:74389103-74389259
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCCTCTCTCCCCTAGGCC
3' ss Score
12.98
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGATTGAGTCGAATGACATTTCAGAGGAGACGATCAGGACGAAGGAAACTGTGGAGG
Seq A exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTGACCTCCCAGACCGAGATGCTCAGGGCCCAAGTAAGTG
Seq C2 exon
CGCTGGAGAGCAAGTGTAAGTCAGGCGAGAAGAAGGTGGACGCCCTCCTGAAGGAGAAGCGGCGCCTGGAGGCAGAGCTGGAGACCGTGTCCCGGAAGACCCATGACGCCTCGGGCCAGCTAGTCCTCATCAGCCAGGAGCTGCTGCGGAAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'47-50,'47-48,52-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.638 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF152941=Leu_zip=FE(59.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACGATCAGGACGAAGGA
R:
TCCTGGCTGATGAGGACTAGC
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development