MmuEX6021429 @ mm10
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134496229-134500149:-
Coord C1 exon
chr5:134500092-134500149
Coord A exon
chr5:134498090-134498173
Coord C2 exon
chr5:134496229-134496385
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCCTTTCTCTCCTAGGCC
3' ss Score
11.71
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTGATCGAATCCAGTGACCTTTCTGAGGAGACAATTCGGATGAAGGAGACTGTAGAGG
Seq A exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTGACATCCCAGATGGACATGCTCAGGGCCCAAGTAAGTG
Seq C2 exon
CTCTAGAAAACAAGTGCAAATCAGGAGAGAAGAAGATAGATTCTCTCCTGAAGGAGAAGAGGCGCCTAGAGGCAGAGCTGGAGGCTGTGTCTCGGAAGACCCACGATGCCTCCGGCCAGCTGGTCCACATCAGCCAGGAGTTGCTGCGGAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-'31-22,'31-19,33-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.621 C2=0.283
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PU(19.2=70.0)
A:
PF123293=TMF_DNA_bd=FE(38.4=100)
C2:
PF123293=TMF_DNA_bd=PD(41.1=56.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATGAAGGAGACTGTAGAGG
R:
CTCTCTTTCCGCAGCAACTCC
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types