RnoEX6064062 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25226326-25229708:+
Coord C1 exon
chr12:25226326-25226383
Coord A exon
chr12:25227372-25227455
Coord C2 exon
chr12:25229552-25229708
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCCTTTCTCTCCTAGGCC
3' ss Score
11.75
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTGATCGAGTCCAATGACCTTTCTGAGGAGAAGATTCGGATGAAGGAGACTGTGGAGG
Seq A exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGGCAGCCTTGACATCCCAGATGGACATGCTCAGGGCCCAAGTAAGTG
Seq C2 exon
CTCTCGAGAACAAGTGCAAATCAGGAGAGAAGAAGATAGACTCTCTCCTGAAGGAGAAGAGGCGGCTGGAGGCAGAGCTGGAGGCCGTGTCTCGGAAGACCCATGATGCCTCTGGCCAGCTGGTCCACATCAGCCAAGAGTTGCTACGGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-'20-24,'20-21,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.414 C2=0.264
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PU(19.2=70.0)
A:
PF123293=TMF_DNA_bd=FE(38.4=100)
C2:
PF123293=TMF_DNA_bd=PD(41.1=56.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATGAAGGAGACTGTGGA
R:
AGCAACTCTTGGCTGATGTGG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]