GgaEX6016950 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2744247-2746450:-
Coord C1 exon
chr19:2746393-2746450
Coord A exon
chr19:2745137-2745220
Coord C2 exon
chr19:2744247-2744403
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCATCCTACTGAAGACC
3' ss Score
4.19
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGATTGAAACTAATGATATTTCAGAAGAGAAGATAAGGATGAAGCAGACCATGGAAG
Seq A exon
ACCTTCAAGACAAACTGAGTAAAAGAGACAAAGAGGTGTCATCGCTGGTGTCCCAGACTGAAGCCCTAAGGGCCCAAGTAAGTG
Seq C2 exon
CTTTGGAAAACAAATGCAAAACCATGGAAAAGAAGGCAGATTCGGTGTTAAAAGAGAAGAAGAGGCTGGAAGGGGAGCTGGAAGCCTTGACCAAGAAAACACACGACGCGTCGGGGCAACTGGTCCTGATCAGCCAGGAGCTGCTCAAGAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291-'11-10,'11-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.517 C2=0.377
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAAGCAGACCATGGAAG
R:
TCCTTCTTGAGCAGCTCCTGG
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]