HsaEX0015676 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73795136-73803589:+
Coord C1 exon
chr7:73795136-73795193
Coord A exon
chr7:73800851-73800934
Coord C2 exon
chr7:73803433-73803589
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCCTCTCTCCCCTAGGCC
3' ss Score
12.98
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATGATTGAGTCGAATGACATTTCAGAGGAGACGATCAGGACGAAGGAAACTGTGGAGG
Seq A exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTGACCTCCCAGACCGAGATGCTCAGGGCCCAAGTAAGTG
Seq C2 exon
CGCTGGAGAGCAAGTGTAAGTCAGGCGAGAAGAAGGTGGACGCCCTCCTGAAGGAGAAGCGGCGCCTGGAGGCAGAGCTGGAGACCGTGTCCCGGAAGACCCATGACGCCTCGGGCCAGCTAGTCCTCATCAGCCAGGAGCTGCTGCGGAAGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'18-26,'18-24,22-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.720 A=0.642 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF152941=Leu_zip=FE(59.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACGATCAGGACGAAGGA
R:
TCCTGGCTGATGAGGACTAGC
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)