BtaEX6110188 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011875 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:HGNC:2586]
Coordinates
chr25:33575030-33578049:-
Coord C1 exon
chr25:33577966-33578049
Coord A exon
chr25:33576701-33576857
Coord C2 exon
chr25:33575030-33575189
Length
157 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTGGCTGGCCTCAGCAC
3' ss Score
4.38
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTAACATCTCAGACCGAGATGCTCAGGGCCCAAGTAAGTG
Seq A exon
CACTGGAGAGCAAGTGCAGGTCGGGCGAAAAGAAGGTGGACACCCTCCAGAAAGAGAAGCGGCGCTTGGAGGCGGAGCTAGAGGCCGTGTCCCGGAAGACCCATGATGCCTCGGGCCAGCTGGTCCTCATCAGCCAGGAGCTGCTCCGGAAGGAGCG
Seq C2 exon
GAGTCTGAATGAACTGCGGGTATTGCTGCTGGAGGCCAATCGCCACTCCCCAGGGCCTGAGAGGGACCTGAGCCGGGAGGTCCACAAGGCCGAGTGGCGGATCAAGGAGCAGAAACTCAAGGATGACATCCGAGGCCTGCGGGAAAAGCTGACGGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011875-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.358 C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGACAAGCTGAACAA
R:
CAGCCCCGTCAGCTTTTCC
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]