DreEX0022137 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58797154-58803165:+
Coord C1 exon
chr5:58797154-58797237
Coord A exon
chr5:58797393-58797549
Coord C2 exon
chr5:58803006-58803165
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCACTGCATCTTGTCTGCAGCCT
3' ss Score
7.56
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AAACTCTGGAGAAACTCACGAAAAGGGAAAAGGAAGTGTCCACTCTAACAACCCAAGTAGATGCCCTAAAGACCCAAATAACTG
Seq A exon
CCTTGGAGGAAAAGGTTCGTCTTGGAGAAAAAACGGCAGATGGACTCATTAAGGAGAAGACCCGTTTGGAGGCAGAGCTGGAGACCATGACTAAGAAATCCCATGATGCATCAGGCCAGCTAGTCAATATTAGCCAGGAGCTTCTGAAAAAAGAAAG
Seq C2 exon
GAGTCTGAATGAGCTGCGAGTGTTACTGCTGGAGTCTCCGCGTCACTCTGCTGGAGTGGATCGAGATCTGAGCCGTGAAGTTCACAGGGCCGAGTGGAGGATGAAGGAGCAGAAACTACAAGATGACATCAAAACCCTGAGAGAGAAACTTTTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596_MULTIEX1-9/9=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.491 C2=0.341
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGAGAAACTCACGAAAAGG
R:
CAGCAGCAAAAGTTTCTCTCTCA
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]