HsaEX6008463 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73800851-73811563:+
Coord C1 exon
chr7:73800851-73800934
Coord A exon
chr7:73803433-73803589
Coord C2 exon
chr7:73811404-73811563
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCGGCTGACCCCAGCGC
3' ss Score
5.08
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTGACCTCCCAGACCGAGATGCTCAGGGCCCAAGTAAGTG
Seq A exon
CGCTGGAGAGCAAGTGTAAGTCAGGCGAGAAGAAGGTGGACGCCCTCCTGAAGGAGAAGCGGCGCCTGGAGGCAGAGCTGGAGACCGTGTCCCGGAAGACCCATGACGCCTCGGGCCAGCTAGTCCTCATCAGCCAGGAGCTGCTGCGGAAGGAGCG
Seq C2 exon
GAGCCTGAACGAACTGCGGGTGTTGCTGCTGGAGGCCAATCGTCACTCCCCAGGGCCGGAGAGGGACCTGAGCCGTGAGGTACACAAGGCTGAGTGGCGGATCAAGGAGCAGAAACTCAAGGATGACATCCGGGGCCTGCGTGAAAAGCTGACCGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'22-27,'22-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=0.151 C2=0.493
Domain overlap (PFAM):
C1:
PF152941=Leu_zip=PU(3.4=11.5)
A:
PF152941=Leu_zip=FE(59.8=100)
C2:
PF152941=Leu_zip=FE(34.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGACAAGCTGAACAA
R:
CAGCCCGGTCAGCTTTTCAC
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)