RnoEX6064061 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25227372-25231913:+
Coord C1 exon
chr12:25227372-25227455
Coord A exon
chr12:25229552-25229708
Coord C2 exon
chr12:25231754-25231913
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCGGCTTTCCCCCAGCTC
3' ss Score
8.57
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGGCAGCCTTGACATCCCAGATGGACATGCTCAGGGCCCAAGTAAGTG
Seq A exon
CTCTCGAGAACAAGTGCAAATCAGGAGAGAAGAAGATAGACTCTCTCCTGAAGGAGAAGAGGCGGCTGGAGGCAGAGCTGGAGGCCGTGTCTCGGAAGACCCATGATGCCTCTGGCCAGCTGGTCCACATCAGCCAAGAGTTGCTACGGAAGGAGAG
Seq C2 exon
GAGTCTGAATGAGCTGAGGGTGTTGCTGTTAGAAGCCAATCGGCACTCCCCAGGGCCCGAGAGAGACCTGAGCCGTGAGGTACACAAAGCTGAATGGCGAATAAAGGAACAAAAACTGAAAGATGACATCCGGGGCCTGCGTGAAAAGCTGACCGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611-'22-26,'22-24,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.264 C2=0.426
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=FE(38.4=100)
A:
PF123293=TMF_DNA_bd=PD(41.1=56.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGACAAGCTGAACAA
R:
CAGCCCGGTCAGCTTTTCAC
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]