GgaEX6016951 @ galGal3
Exon Skipping
Gene
ENSGALG00000001291 | CLIP2
Description
NA
Coordinates
chr19:2743982-2745220:-
Coord C1 exon
chr19:2745137-2745220
Coord A exon
chr19:2744247-2744403
Coord C2 exon
chr19:2743982-2744141
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTATCCTCTTCTTCCCCTAGCTT
3' ss Score
9.01
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACCTTCAAGACAAACTGAGTAAAAGAGACAAAGAGGTGTCATCGCTGGTGTCCCAGACTGAAGCCCTAAGGGCCCAAGTAAGTG
Seq A exon
CTTTGGAAAACAAATGCAAAACCATGGAAAAGAAGGCAGATTCGGTGTTAAAAGAGAAGAAGAGGCTGGAAGGGGAGCTGGAAGCCTTGACCAAGAAAACACACGACGCGTCGGGGCAACTGGTCCTGATCAGCCAGGAGCTGCTCAAGAAGGAAAG
Seq C2 exon
GAGCCTGAATGAGCTCAGAGCGCTGCTGCTGGAGGCGAACCGGCACTCACCTGGGCCTGAGCGCGACCTGAGCCGGGAGGTGCACAAGGCCGAGTGGAGGCTGAAGGAGCAGAAGCTCAAAGATGACATCAAAGGGCTGAGAGAGAAGCTGGTTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001291-'13-11,'13-10,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=0.377 C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAGACAAACTGAGTAAAAGA
R:
CAGCACAACCAGCTTCTCTCT
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]