MmuEX6021430 @ mm9
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134970079-134974043:-
Coord C1 exon
chr5:134973960-134974043
Coord A exon
chr5:134972099-134972255
Coord C2 exon
chr5:134970079-134970238
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGCCGCTTCCCCCAGCTC
3' ss Score
8.96
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCCTGCAGGACAAGCTGAACAAGAGGGACAAAGAGGTGACAGCCTTGACATCCCAGATGGACATGCTCAGGGCCCAAGTAAGTG
Seq A exon
CTCTAGAAAACAAGTGCAAATCAGGAGAGAAGAAGATAGATTCTCTCCTGAAGGAGAAGAGGCGCCTAGAGGCAGAGCTGGAGGCTGTGTCTCGGAAGACCCACGATGCCTCCGGCCAGCTGGTCCACATCAGCCAGGAGTTGCTGCGGAAAGAGAG
Seq C2 exon
GAGTCTGAACGAGCTGAGGGTGTTGCTGTTAGAAGCCAATCGCCACTCCCCAGGGCCCGAGAGAGACCTGAGCCGTGAAGTACACAAAGCTGAATGGCGGATAAAGGAACAGAAACTGAAGGATGACATCCGGGGCCTGCGTGAGAAGCTGACCGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=0.283 C2=0.519
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=FE(38.4=100)
A:
PF123293=TMF_DNA_bd=PD(41.1=56.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGACAAGCTGAACAA
R:
CAGCCCGGTCAGCTTCTCA
Band lengths:
243-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: