BtaEX6110396 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35080272-35082388:+
Coord C1 exon
chr25:35080272-35080441
Coord A exon
chr25:35080911-35081048
Coord C2 exon
chr25:35082253-35082388
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCCCCGTCCCCCTAGAAA
3' ss Score
11.17
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGGCCCTGAGTTTGCAGGCACCCCCGGTGAAGGAGGGGCCACTCTTCATCCATAGGACCAAGGGCAAAGGCCCCCTCACGTCCTCCTCCTTCAAGAAGCTCCACTTCTCCCTTACCACGGAGGCCCTCAGCTTTGCCAAGACCCCCAGCTCCAAG
Seq A exon
AAAAGCACCCTCATCAAGCTCGCCAACATCCGGGCAGCAGAGAAGGTGGAGGAGAAGAGCTTCAGCAGCTCCCACGTCATGCAGGTTATCTACACGGATGATGCGGGCAAGCTCCAGACCGCCTACCTGCAGTGCAAG
Seq C2 exon
AGTGTGAACGAGCTGAACCAGTGGCTGTCTGCCCTGCGGAAGGTCTGCATTAACAACACTGGCCTGCTGGGCTCCTACCACCCTGGCATCTTCCGCGGGGATAAATGGAGCTGCTGCCACCAGAGGGACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448-'27-27,'27-24,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=75.4)
A:
PF0016924=PH=FE(42.1=100)
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGGGCCACTCTTCATC
R:
GGTGGCAGCAGCTCCATTTAT
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]