RnoEX0074207 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23602743-23604908:-
Coord C1 exon
chr12:23604739-23604908
Coord A exon
chr12:23604069-23604206
Coord C2 exon
chr12:23602743-23602878
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTGGCTGCCGCAGAAA
3' ss Score
8.85
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGGCATTGAACTTGCAGGCTCCGCCTGTGAAGGAGGGACCACTGTTTATCCACAGAACCAAAGGCAAAGGCCCTCTTGCGTCCTCCTCGTTCAAGAAACTCTACTTCTCTCTTACCACTGAAGCCCTCAGCTTCGCCAAGACATCCAGCTCCAAG
Seq A exon
AAAAGTGTCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTCGGCAGCTCCCACGTCATGCAGGTCATCTACTCAGACGATGTTGGCCGGGCCCAGACTGTCTACCTGCAGTGCAAG
Seq C2 exon
TGTGTGAACGAGTTGAACCAGTGGCTATCTGCACTGCGCAAAGTGATTACCAACAATGCCAGCCTCCTGGGCTCCTACCACCCTGGCGTCTTCCGTGGGGACAAGTGGAGCTGCTGTCACCAGAAGGAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=75.4)
A:
PF0016924=PH=FE(42.1=100)
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGGAGGGACCACTGTT
R:
GTGACAGCAGCTCCACTTGTC
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]