GgaEX7009930 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4169438-4170192:-
Coord C1 exon
chr19:4169878-4170192
Coord A exon
chr19:4169668-4169805
Coord C2 exon
chr19:4169438-4169573
Length
138 bp
Sequences
Splice sites
3' ss Seq
CACTGCGTCCCCAACGGCAGAGG
3' ss Score
4.17
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTGTGCAGATGGTGGGCAACATGGAGCCAGCGGCAGGGCGGGCCAAGGAGGAATGGCTGGCCCCGCTACAACCCGCCCTGCAGCACGGAGCCTCCCGCATGAGGGCCTTCATCACCCGGCTGGTGGGCACGGAGGAGGAGGAGGAGGGCGGAGAGGGGTGGCCGTGCGCCCCCCGCGCTGCCGTGGTGAAGGAGGGGCTGCTCTTTGTCCACAAGACGCGGGGCAAAGGGCCGCTGCTTGCCTCCGCCTCCAAGAAGCTGCACTTCTGCCTCACCGGAGAGGCCCTCAGCTTCGCCAAGAGCCCCGGGGCGGAG
Seq A exon
AGGTGCGGTTCCATCGCTTTGGCCAACATCCGCGCGGCCGAAAGGGTGGAGGAGAAGAGCTTCGGGAGCTGCCACGTCATGCAGGTGGTCTACGTGGATGAGGCCGGGCAGCAGGAGACGGCGTACCTGCAGTGCAAG
Seq C2 exon
TGCGTCAATGAGCTGAACCAGTGGCTGTCCGCCCTGCGGAAGGTGTGTGGCAATAACCCGCAGCTGCTGCACGCCTACCACCCCGGCGTCTTCCGCGGGGACAAGTGGAGCTGCTGCCATCAGAAGGACAGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'21-24,'21-21,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=5.7),PF0016924=PH=PU(40.2=41.0)
A:
PF0016924=PH=FE(42.1=100)
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTCTTTGTCCACAAGA
R:
CTGTCCTTCTGATGGCAGCAG
Band lengths:
250-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]