HsaEX0000853 @ hg19
Exon Skipping
Gene
ENSG00000228903 | AC004985.13
Description
NA
Coordinates
chr7:44073532-44078607:-
Coord C1 exon
chr7:44078406-44078607
Coord A exon
chr7:44076271-44076408
Coord C2 exon
chr7:44073532-44073910
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCCTGACTGCCCCAGAAA
3' ss Score
6.48
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
CTCTCTATTCCCCTCCCTCCCTGGCCTGGCAGAGCTGGACCTGCAGCGGACGCTGAGTTTGCAGGCGCCACCTGTGAAGGAGGGGCCACTCTTCATCCACAGGACCAAGGGCAAGGGCCCCCTCATGTCCTCCTCCTTCAAGAAGCTCTACTTCTCCCTCACTACCGAGGCCCTCAGCTTCGCGAAGACGCCCAGCTCCAAG
Seq A exon
AAAAGCGCCCTCATCAAGTTAGCCAACATCCGGGCAGCAGAAAAGGTTGAGGAAAAGAACTTTGGCAGCTCGCACGTCATGCAGGTCATCTACACGGACGACGCCGGCAGGCCCCAGACTGCCTACCTGCAGTGCAAG
Seq C2 exon
TGTGTGAATGAGCTTAACCAGTGGCTGTCTGTGCTGCGGAAGGTGAGCATCAACAACACCGGACTGCTGGGCTCCTACCACCCTGGCATCTTCTGTGGGGACAAGTGGAGCTGCTGCCACCAAAAAGAGAAGACAGGTGGGAGAGGAGGCCTGGGTCCCGGGCTCTGCATCCGTCCACTGCGAGATCGGGCCTCTGGCTGAACGATGGGACCGTGAGCCCTGCTGTGCACCTGCAGGGACATAACCCAAGGAATGCTGGCCCCTCCAGGAGCTCTGGGCAGAAAGGGTCCCGTGGACCAGGTGGTTTGGGAAATGCCACGTGATGTGTGTGAAGCACATGAGTGAATTCGCTGAAGGCTCTAAGGAGGCCCGAAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228903_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTATTCCCCTCCCTCCCT
R:
TTGTTGATGCTCACCTTCCGC
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)