MmuEX0038884 @ mm9
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136579707-136581609:+
Coord C1 exon
chr5:136579707-136579876
Coord A exon
chr5:136580386-136580523
Coord C2 exon
chr5:136581474-136581609
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTGGCTGCCCCAGAAA
3' ss Score
7.85
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGCTGGACCTGCAGCGGGCTTTGAACTCACAGGCACCACCTGTGAAGGAGGGACCATTGTTCATCCACAGGACCAAAGGCAAAGGCCCTCTTGCATCCTCCTCGTTCAAGAAACTCTACTTCTCCCTTACCACTGAAGCCCTCAGCTTCGCCAAGACGTCCAGCTCCAAG
Seq A exon
AAAAGCACCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTCGGCAGCTCCCACATCATGCAGGTCATCTATGCAGATGATGTTGGCCGTGCCCAGACTGTCTACCTGCAGTGCAAG
Seq C2 exon
TGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGCACCAACAACAGGGGCCTCCTACGGTCATACCATCCTGGCATCTTCCGTGGGGACAAGTGGAGCTGCTGTCACCAGAAGGACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-'24-26,'24-23,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=75.4)
A:
PF0016924=PH=FE(42.1=100)
C2:
PF0016924=PH=PD(15.0=34.8),PF0077914=BTK=PU(68.8=47.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACTCACAGGCACCACC
R:
ACGGAAGATGCCAGGATGGTA
Band lengths:
247-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: