BtaEX6110402 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35072630-35075405:+
Coord C1 exon
chr25:35072630-35072759
Coord A exon
chr25:35074613-35074694
Coord C2 exon
chr25:35075274-35075405
Length
82 bp
Sequences
Splice sites
3' ss Seq
GGTGCTCTGGTCCCTCGCAGGGA
3' ss Score
7.97
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTTTCAGTGGGTGGGCCCACCTGACCGAGGTCGACCCTGATGAGGAGGTGCAAGGTGAGATCCACCTGCGGCTGGAGGTGGTGCCAGGGACCCGGGCCTGCAGGCTGCGCTGCTCTGTGCTGGAGGCCAG
Seq A exon
GGACCTCGCCCCCAAGGACCGGAATGGCGCATCTGACCCCTTTGTCCGAGTGCGATACAACGGCCGCACGCAGGAGACCTCG
Seq C2 exon
ATCGTGAAAAAGTCATGCTACCCTCGTTGGAATGAGACGTTTGAGTTCGAGCTGGAGGAGGGGGCGGCGGAGGTGCTGTGCGTGGAGGCCTGGGACTGGGACCTTGTCAGCCGCAACGACTTCCTGGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448-'7-9,'7-8,10-9=AN
Average complexity
A_S
Mappability confidence:
90%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
PF0016825=C2=FE(32.9=100)
C2:
PF0016825=C2=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGTCGACCCTGATGAG
R:
CCTCCTCCAGCTCGAACTCAA
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]