MmuEX0038892 @ mm10
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136091748-136096792:+
Coord C1 exon
chr5:136091748-136091809
Coord A exon
chr5:136095527-136095608
Coord C2 exon
chr5:136096661-136096792
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCGTTTCACTCCCAGGGA
3' ss Score
10.74
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACGAGGGACGCGCTAGCCTCTCACCCAAAGG
Seq A exon
GGACTTAGCACCAAAAGATCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATGGCCGGACCCAGGAGACCTCG
Seq C2 exon
GTGGTGAAGAAATCCTGCTACCCACGCTGGAATGAGACATTTGATTTTGAGCTGGAAAAAGGAGCCTCAGAAGCACTGCTGGTGGAGGCCTGGGACTGGGATCTTGTTAGCCGGAATGACTTTCTAGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.178 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
PF0016825=C2=FE(32.9=100)
C2:
PF0016825=C2=FE(52.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGATCGGGAAGGTCTGC
R:
TCCGGCTAACAAGATCCCAGT
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types