RnoEX6063930 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23611901-23615678:-
Coord C1 exon
chr12:23615549-23615678
Coord A exon
chr12:23612704-23612785
Coord C2 exon
chr12:23611901-23612032
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGTTTCATTACCAGGGA
3' ss Score
10.32
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATTCATCGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCAGGGTGAGATCCACCTGCGTCTGGAGGTGGTGCCAGGGCTCCACGCCAGCCGGCTGCGCTGCTCTGTGCTTGAGGCCAG
Seq A exon
GGACTTAGCACCAAAAGACCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATGGCCGGACCCAGGAGACCTCG
Seq C2 exon
GTGGTGAAAAAATCCTGCTACCCACGCTGGAATGAGACATTTGAGTTTGAGCTGGAAAAGGGAGCCACAGAAGCACTGCTGGTGGAGGCCTGGGACTGGGATCTTGTTAGCCGGAATGACTTTCTAGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'7-10,'7-7,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
PF0016825=C2=FE(32.9=100)
C2:
PF0016825=C2=FE(52.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCATCGGATGGACCCACCT
R:
TGTCTCATTCCAGCGTGGGTA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]