GgaEX6017116 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF56]
Coordinates
chr19:4172147-4172776:-
Coord C1 exon
chr19:4172647-4172776
Coord A exon
chr19:4172367-4172448
Coord C2 exon
chr19:4172147-4172278
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTCACCCTCTCCTCCACAGGGA
3' ss Score
11.8
5' ss Seq
ACCGTGAGC
5' ss Score
4.78
Exon sequences
Seq C1 exon
GTTACAGCGGCTGGGTGAGCCTCAGCGAGGTGGACCCCGATGAGGAGGTGCAGGGGGAAATCCACCTCCGCGTGGAGCTCCTGGAGGGCGAGGGCGGCCAGCGGCTGCGGTGCACTGTGCTGGAGGCCAG
Seq A exon
GGATTTGGCCAAGAAGGACCGGAACGGTGCATCCGACCCCTTTGTCTGTGTGAGCTACAATGGCAAAACGCAGGAGAGCACC
Seq C2 exon
GTGGTGAAGAAGTCCTGCTATCCTCGCTGGAACGAAGCCTTTGAGTTTGAGCTGCCCGACCCCCCTGCAGAGAAGCTGTGTGTAGAGGTGTGGGATTGGGACCTCGTCAGCAAGAATGACTTCTTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001876-'6-6,'6-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
PF0016825=C2=FE(32.9=100)
C2:
PF0016825=C2=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGTGCAGGGGGAAATC
R:
CCCACACCTCTACACACAGCT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]