BtaINT0004146 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr24:50069881-50075697:-
Coord C1 exon
chr24:50075588-50075697
Coord A exon
chr24:50070147-50075587
Coord C2 exon
chr24:50069881-50070146
Length
5441 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTCTCCTGGGTCTCTTCCAGCCT
3' ss Score
7.42
Exon sequences
Seq C1 exon
GAGTGAGAGAGTCCCATCAGATAAGCATTTTTAAGATAATTGCTTCCATCCTGCACCTCGGAAATGTGGAGATTCAAGCCGAGCGCGATGGTGAATCCTGTAGAGTATCA
Seq A exon
GTAAGTTGCCCTCCAGCGTGGGAGATAACGTGTGCACACTTCACTCTGCCCCTCCAGTTTTGTACAACTGAGATGCCTTTGCACTTAGAGGACATTCATAGGTTATTTATTCTTAAGAGTAACGGTTTCTGTTTCCTTGCTGATAATTTTTTAAAGGAGCAAATCCTTTTCAAATCAGCTGCCATCAAGGTTCTGTCCCTGAGGGCAGGGAATTTAGGGTTTATTCAACAAATTCTTTTTGATGGTTTGGTTTCCCAAGTGTCCTGAAGTCCATGGGATTCTACAGAGTGTGGTCAGCTCATGAGTACTTCTGGTCTGTGCTTGCTGGGACGTGAAGGGGTATTGGACACCATGCTGGTGACTGACCCCAAGGAGCTTACAGTCTAATCGGGTAGGCAGGATTGATGACAAGAGTGGCCAGGATTTTGACGGTACAAAGGAGAATATTGAGACTGTGTTGCAAACTGTGAAGTGCTCTGTAGATGCTCTTAATGACTGTTTTCCTGGTGCCCAGTGTAGATAAAGAATGTCTTCATAGGTGGATGGGGGAGCACCGCCAGTCACAAGCAGTACAGACAGCGTGTTGTGTGCTCTCTGGTGTGTGGTGTCAGGCTGGACTGAACTGGTCTTCTCACCTTGCGTGAGTGAGTCTGCAGTTGCTTATTTTAGGTCTTTCATGTCCATTTATGGCCAAGTCCTGGGAGGTACAAAGCACAATTCTTGCTAGCAAAGACTTAGAATTGAAGTAACTGGGGAAGTACAGAAGACAATGCTGTGGATAATGAACGTGGGCACGAGTGTCATCGCCACTCACAAGCTGATGCTTTTTCCGCTGTGCATTTTATAACTCCGCTAAACCTGGCCCTGCCTCAAAGGAGCGGAAGACCTTTGACCGAGCTCATCGCCCCGTCCCACCCCCATACATCTTCCCTAAAAGAGAAATAATAGCTTTGGGTTTGGAGCCGAGGAGGGCTGCCAGCACCCTCAGCATGGAATCTGCAGTCCGTGTGAAAGCAGGAAACGCTGGTGCTGGGCCGTGCTTGGTGTCCCCAGACGTGGATGTGCGTGTGCCTGTGTGTGTATGCGTGTGTGTGTGTCACAGGGCAGTGACGATGCTGTGAGACAGATTGTGGTGAGTGGAGAACCTGGTGCCGTACTGATGTGGGGAGTGATGGATGGGCCCTAGTACAAGCCAGACAACCCCTGGCCTGAGTATTTAGAGCCAGCGAAGCACAGAGTGTCCGTGCCTCTCTACCCCCCACACCCCTGTAAATGCCCCCTGGTTCCTCAGGGCACCCATACTCTGGCTCGTGCCGGGGACAGGTGAGTCTGGAAAGATTGGCATTGGAGAGCTCCAGTGTCGGTGGAGAAATGCAGGAACAGTGACAGATGTCCCCTGGCCTCCCCCCACCACCCCCACCCCCGGTCTCCTCTTCTCAAGGTGACAACCTGGCCACACCCCCGTCGTGGGTTCTTATCACATTCACCCCTCTCCTCCGACCCTCTCAGGGTGGTTGTACTTTTACATTTATTATGTGCTGATTTGCTGCATCTCTGTCCCTCGTGAGACTCCAAAGCCTATGAGAACATGGACTGTTCTGCTGACTGTGGTCCCGCCAGCACCCAGCACAGGGCCCAGGACTCCATGGACACCCGCTAAGCAGATGGGTGGCTTTCGGGGCCCCCTCGGCTCAGCGGGGCGCAGTGAGCCAGTGGAGGGGCCCTGGGCGGGGTTGACGGCGAAGTGGGAGGACCAGGGCCAGAGAGCCTCTGGGCACCTGTGCTCGGGGGTAGGGTGGGGCCCTCTCCCTGGAAAGCTAAGGCTCTGCTAGTAGTGAAGTGTTGCTCTGATCTTCTAGTGGATCTCCCACACCAGCCTCTGCAGGGACCTTCAGGGGAGAAGGCACATGAATGTTCACTGGCGGCAGCACATGGATGCCCGCTTCCCCCTCTTAGCTCAGGGACCGTGTCTCCTGTTCTCCAGCCCTGACGCACACTGGCACCCACAAGTGTGTGTGCAAAGGCTGTGAAGGAGGGGTAGCGGGCACACTTGGAGAGGGGACAGAGGACACAGATGGTGGTGAAGGGATGGGGGAGGACGCCTGGCAGCTGGAGGCGTGGACGCCACGTGGTGCAGGAGGCCCTTCCCTGAGAGGTGATGGGAGTCAGAGGATTTGAGCACAGGTCTGTGGTCTAGGCAGGTCTCGCTCTCCAGTTGGAGGCTGTGTCGAGAACTAACTGGGAGAGAGAAGTCTTGGGTCAGGACTGCCAGGGTTCAAACTCGGGTTCTGCCGTTTACTGATAGTGACTCCCCTTTGAGTCTGTGTCTCCTTCTGCAGGTGGGGGCGCTTGGCACAAGGCTCAAGGGCTTGAGTTCTTGACTGTTCTCATCCTTGTTGTTACATCGCCCTCCGTTCACAGGATTGGAGAACCTAAGACCCAGAGAGAGGAACTCTTTCTCTAAGGTCATCATGACGGTTCAAGGCAAAGCCAAGTCAGAGCCTGGCCAGTGCTCTCTCCCCCAGACCACTGCCAGCCTTGCTTCTTGGCCCCTGGGGGTTGGGTGGTACCGCACCAGCCTGGGGTCCGCCCCCTTGGTGCCCGGCACAGCGCTGAGCATGCCGTGTGCGCTCGGGAAATGCTTCACTAAATGGTTGGTAGCGATTCCGGTTTGTGCCTCGGGTACATAGGGTGGACCTCCTGCTGGAAAGGCTGTCGGTCCAGATGCACTGTGCCTTCTGCTCGGTAGTTTTTATTTGTAATTAAAGCATGAAAATATGTTCCCTGCCTGCCACAGTTACCTTGGAGATGTAGCAGCATGCAATTACTTGGACACCAGAGGCAATTTGTTACTTGAATTTGGCGATTGGGGCCCACAAAACTCATCTGCTGCCTATGATGCTGGCCATTTTTGATGGGTTTAGCATCATTTAATTAAGCTTAAATGTAATTGCATGGCATTAAATCAGTTTCAGTCATCACCTTTAATCAACAGTCAGAAGTATCTACGGCCAAGCCATGCCCTACCACAGCGGATAAGAACCCATCCCGTGGTGATGATCAGAAAGTTCCAGAACTCATGGTTCTTTCTGTACTGCGTTCACCTGAGAGATGACAGGGAGGGGAGAGAGGCTGCGGGCAGGCCTTGGGCGGTCATGTTTGCTGCTAGCAGGCCGTTTACATATCAGAGAATGCAGCTCAGTGCTTTGCCTAGCAGTTAAGGACTTCTTGGTAACAGGTCAGATTAACAAGTTGGACACCTGCTACCTCTGAACCTGTTGCCTGCCAAGCTGTCCCCAGGCACTTAATGCTATCACATAGGGCTTTCTGTTTGCAGGAGAGGGCGGGTGGTGGTGGGGGGGTGGGGGAGAGCTGCAGGGTTAGAAGGCTCTTGGCCAGAAGTGGCCACAGCTGCCCCACCAGCCGAGTGAGTGAAAAGGCAGAGTCCTCCCACGCCCCCAGCCCAAGCTGATTCTCTGCCCACGCTTGAAGCCTGGTTAAGAGCTCTGGGCCACAGGCAGGTCTTCTATTTCACCCTGGTTTTTCCTCATGTGAAAAATAAAGGGGATTGGATTAGAATGATGATCCCTAAGTATTTTCCTGAGAACCTTAAATTAACCCTAGGCAATTTCTTAGGAAGTTAAGGGTCTTTGTCAATTAGTTCAGGAAATGCTCTGTGAAATCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGAGACAGGGTATGTTAACAAGCCCCTCCCATGTTCAACTTACAGTCACTCTCCCCACCCCTGCACTTGTGTTGGGTACAGCCAATTACTGGTCTTTGTAACTATGACTCCACAAGCCATACTCTGGAAAACCTGTGGCCTTCCTGATTTGGGGAGGTTCTTTCCTACTCTGACATTTTATTGTTTTGTAATTGTGTGTATTTGGGTAGACGGATTTTAAGTATCTGTAGGAGGGAAAAAATGGCCTGGGAAAGTGGTACAGTTATCTGTGTTAATTTTCATCGGACAGGCCCCACATTTACATCTTCCATGGCAGTCTCATCAGAAAATGAGTCCCACAAGCAATTCAGGGCCATTAGGAGGTAGCTCATGATGTTCCTGGATTGCCTTTCCACCTCGGAGTCCTGAAGCTCTCCAGCAGGCTCATGGCTGGGTTATCAGCTTTCCCTGGGGGATTCAGATATGGAAATGAATACAGTAAGAACCTGGAGAGGAGAAGCAGGTTTTCTGGGGGGAGTCGTGAATGGGCAGCAAGGGTGACCCAGGAGACTCATACACTTGGGTGAAATAAGACTCTGGGTGACTTGGTTATCAGTGACTCAAGGGCCACGTGGTAAGATTGGTACTTTGGGTCAGTAAGGGTCAGGATCACGTGCAGCTGGCTACCTGGGTGAGTTCTTGCACTTCTCTGGGACTCAGCTTCCTGCCTGTATGGCAAGGCGTTCCTATTTTTCCCAGCTCTAAACGTGAATATAAGTTATAGCATCCCAAGTGTTCTTCCCTGGTCAAACTGGTCCCTTACTTTTACCATTTGTCCTAGCTTTCCACCTAAAATCACTTTTTTTTCCCCACGTGGCAAGTGCTTAAAGAATATTAGGAAGTTTGGGGCTATGAGTTTAGTATCACATATAAGTTTAGTGTAAGTCTGAGGTTAAGGTGAAAGCAGCTCTGCTTGGCAACTTAGGACAAAGGCAGTGTCAGTGCGCTATTGCTGATGGGATAGGGGTGGTCAGCCCAGGGCTTGTTGCTGAGCATGCTGCTCTGGGCCGTGGGTCAGTTCGAGATAGTGCTCGAAACTGAGGCCCTCTCCTGGGCTGTGGACAGAGCACTACTCTGCAGCTGGAAGTTGCAATCACTGTGATTCTGCCTTCTAGCCCCTTACTCTTGGTGGATTATCCATTCCTAAGCTCTCAGTTCTCATTCTGCTTCCTTCACTCGAAAACCCTCTCCTCCCGTTACCCTGCAGCCGCTGTCAGTGGAGGCAGGGACAGGGCAGACGCAGAGGTGTTTTTTAAAGCCCTGCTGATTACTTGGTCCTTAGCAGGTCCTTAGGGCTTCCCTGGTGGCTCAGTGGGTAAAGAGTCCGCCTGCAGTGCGGGAGAGCCGTGTTCCATCCCTGGCTTGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAGTCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCACAGGGTTGCAAAGAGTAGGACACGACTGAGCGACTAACACCAGCAGGTATTATCAGTTTGAGCCACACTCTCTGGGCCCTGATGATCACTCAGTGGTGTGAGAGTGCAGGAGATGGCTGGGGCAGTGGCTGGGGATGAGATGGGGTTCTGAGGGGCCTAGAGTTGGCGAGAGGGGAGAGGGCGTGGTCTGTCCTCCACGCCCCTCCTGAATCCTTCTCCTGGGTCTCTTCCAG
Seq C2 exon
CCTGAGGATGAACACCTAAGCGACTTCTGCCGCCTGCTGGGCGTGGAGCTCAGTCAGATGGAGCACTGGCTGTGCCATCGCAAGCTGGTCACCACCTCGGAGACCTACGTCAAGACCATGTCCCTGCAGCAGGTGGTCAACGCGCGCGACGCCCTGGCCAAGCACATCTATGCCCAGCTGTTCCACTGGATCGTGGAGCACGTCAACAAGGCCCTGCACACCTCCCTCAAGCAGCACTCCTTCATTGGAGTCCTGGACATCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455:ENSBTAT00000061584:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]