RnoINT0097291 @ rn6
Intron Retention
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70606270-70611556:+
Coord C1 exon
chr18:70606270-70606379
Coord A exon
chr18:70606380-70611290
Coord C2 exon
chr18:70611291-70611556
Length
4911 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCCTGCCTTCCTATCCTCAGCCC
3' ss Score
8.75
Exon sequences
Seq C1 exon
GAGTTCGGGAGTCCCATCAAATCAGCATCTTTAAGATAATTGCTTCTATCTTGCACCTTGGAAGTGTGGAGATCCAGGCCGAGCGGGATGGGGACTCCTGCAGCATATCG
Seq A exon
GTAAGTGGCACCAGAGGTAAAACGTGCACAGTTGAGACTCGGATCCTCCCGCCTGATACCATGGGCGTTCGCCCCTGTGCTTAGAGGGCACTCCTGGGTTATTTATTCTATGCAGTAATGACTTCTGTTTTCTCGCTGATAATTTTTTTTTAAAGAACCAATTCATTTTAAATCGGCTGCCTTTGAGTTTCTATCACTGGGGCAAGGGATTTAGTGGCCAGTCAATAAATTTGTCTGATGGGTTTATTTTCCAAGTACTCTGAGGTACATAGAATTCTATGACATGTCATCAATCTATTGAGTACCACATGGACTCGAGGTTGAAGTCTTTGCAGCAAGCAAATGGAGGGTTGGGCACCATAGTCGGTGACTGCTTCTAAAGAGCTTGCATCCTAGCTGAAAAACCATCACAGAACGGCACTGGATGACCTTTTCCCCATAGAAGGCAGAATACTAAGTGAGGCATCTCAGTCAAGGTCCTACCAGCTCTGACAGTTCCTTAAAGGCTTATAAAGGTCCTTTCTCAGAGCCTAGTGTCGCAGTTGACATGTGATAGACAGAAGGTGGCAGCGTGTAATGGAGGATGCTGGGAGAGCTCACGTTGGTAGGGTAAGCAGCAGTTTCTGTCTGTCTGTGTTCTCTCTGAAACCCAGTGCTGTTGGCCAGGGCTAAACCTCCAGTCTGGTCTTGAATAGGACATCTGTCATGGTTTCACTTCTGTGCCTGTCTGTGGCTATCCTCCACGGAAGTACTAGATGTGATTCTTCCTTCCCCGGATGTGGAATTTAAATAACCAGATTCTGGGACAAAGGACAAGGAGATCACTAGAGAATTCAGATGTGGGCGTGCCCATTCCAGCCACAAGCCGCAGCCTTTGTCCTTCATTGCCATCTGTATAGGACAAGAATTAGCAGACGTTCAAAATATCCCTACCTTTAGGGAGGGAAAAACTGGAACTCTCTTTGGGTTCAACAGAGCTCCTCCCCAAACTGCCCTCCAGCCTCACATGAGAGCTTTGAGGTTCCCACCTGTACTTCTGAGAAAGGTACAGACTCAGGAGCTTGCAGTATCCCAGAGCAGTTTCTGGCATCTGACGTTCACAAGTTGCCATGCACGTGGGTGTGCTGCAGGGTGGGCAGAACCTACAGGCGTAGAGGGGATGTCAGTCACGATGCCTTAACGGCAAGTGGGGAATTGCAAAGCCTCCCCGGTGAATATAGCCCTAACTGATCCTAGTGAGCATTTGAGGCAGGTGAAGAGTTGTCCCTTTGCAAAAGGGAGGAAAAGTGTGCAGTGTTTATGCCTCCCTTATGCACGCCCCTTCCTAGCAAATATCCCATGTATCTTTAGGGCAGCCCTATTCTGCAAGGGACAGGGGAGATTGGGAGGACACGCATTGATAAATTCCTGGCTTAGGCTGGGGACATGAATGGGTGACCAATATTTCCTTACTCTCTAGCCACACACTGCCTGGTTCTCGCCCCTGGTCTCAGAGTCACACTCCTGGCCATGGAGCCTTTATTTGGTTTTTTCTTTAGTGTGTGCATTGCTAGAGATCAAGGTTGAGGGTCCACAGCACACTAAACCTCTTTGCCACAGGTTCTTACAGCACTCTAAGCCTCTCTTGCTCCCAAGTCTTAGCACAGTGATTTTGCATTCCTTGTGTGAATATTTCTCTCCCTCCCTCCCTCCCTCCCTCCCCTCCTCCCCTTTACTCCTCCTTTCCCCTCCTCTTGCAAACTGATTAGGGCAATAAGTCTGTGTTCTTAGTCAGCTTTGCAGTGTGCAGGGCCCAGCAGACACTCTAGAATGGGTAGCTGGGTGATTCATCCAGGCTGTCTAGGCTTTACTGGTAATGAATATGAGAGCCACAGTGGATGAGACAGAGCTCACTGGGTACCAGAAGCAAAGCCCTGAGCACCAGCCCTGGAGGACCATGGCCACTTTGTAGAAAGGTCCAGCCTTGGGCTTGTAGGTACAGTGTCTCTGATATTAGGACTTAGTCCTTCACTCCTGGGCGTTCATGTGGAGGGGAGGAGTCGTCGTTTTCAGTGCCTGTTCCCCGCTCCACCACTAAACTGCAGGGCCACCTCTATTGCATTCTACTTGATACACGATGTGATTGTGAGGTCTGCACAAAGATGGCACCATCGGGACACACTGGGAGAACGATGGAGAGGGGATAGAGGTGACAGCGGAGATGGCCTGAGAGGGGAGGCTTGTTAGCATGGGTTGAAGGTCTAGGCTGTGGGAGTGATGACAGCATCAAGGTTGCCAGGTACATCCGTTTCCTCCTCTACTGTGAGCAGAGGGAGAACAGGGCCCTCCCTGCATGAAGGCCTTCACTCGGAGCTGATGATACAGTTCTAAACCAGTACTATTCTGGCTGTTGGGCCATAATGGACCTTAAGAACATGCCCTTTCCTCTACCGAGGAACACCTAATAAAGCCCAAATAAACCTAAAGAAAGCCCAGGGAAAGGAACCTCTTTCTTGAAGGGCAGGACAGGCATGGGCAGGGTTCTATCCCATACCATCCCTCTCACTCAATTGAATTTCCACCCTTCCCCACCCCCAACACACATACACCTGCCAGCGACCCAGTGACCCAGTGTCACAGGTGCTCAGCCCAGGTGTGAGCTCCAGAAGTCTGAGAACCACTTCCAGCCGGATCCTCGGTATGCGCCTCAGGCCCATCGGTGGGTTTGCTGTGCCCTCTGCTCTTGAGTGTTTTACTTTTAATTAAGGCATGGGAATGTGTTCCATGATTGCCAGGGCTACCTCAGAGATGAAACGCTGTCCCATTAGTTGGGACACCAGAGGCCATTATTTTCCCCTTGAATTTGGCAACGCGGGCCCATAAAACTAACCTGCTGTCTATAATGCTGACCATTTTAGTGGATCAATCATCATCTAATCATGCTTAAATGTAATTGCATGACGTCCAATCGGTTTCTGTTAGTACCTTTAATCAGCAGTCAGGAGTGTGGGTGGGAGCACAGTCCCACTGTGGTGTCGAGAAACCTGTTCCCTGGTGGCTATTAGAGTTAGCTCCCTCACTGTGGTTGCGTCTCTGCCACACTCTAGCAAGAGAGAGGAGAGAGGGGAGGAGCAGGAAGAGGAAGGAGGGGAGAAGAGGGCATGAGGGAGCAGGCCCATTGTTTGCTGCAAGCAAAACCAGTCAAATGTGAGGGGATCCTCTGTAGTGTGTGCCTAGCAATTAAGAAATCCCTAAAAGTAGGTCAGACGAACAAGTCGGACACTCGCCACCTATGAACTCGTTGCCTGCCAAGCAGGCTCCAAACTCTATGGTAACGCCATGTTGGAGCAGGCTCGGGTAGGGTGGCTGCGGATGGAACCGGTGGCCAGGAGTAGCCATGACACCGTTATCTGCTTAGTGAGTGGGAAGGACAGATCGCTACATACCAAGCCCAGCCTACTCAGGCAGCTTGGCTTGGGCTGTCAGGGAGTTTTCCTCGGCCTCATTTTCCTCAACTGAGTAATGCAGGATAGACCAGAATGGCAGCTCCCAGGCAGGAGCTCCCTAGAGACAAGGAGCCTTCGTTCCGATGAGTCTGGGAATGTTCTTTAACCTGCTGTCTTGGTGTTCATGAGCCCAGCTGTGCTGAACCTGGTTTAACACTCGTTAGCGCTATCTCCCCGCTGTATCCCTGCCCAGGTCTGGGGAGCCCGCTGTTCTCGAGGCTTGGGGGAGGGGCATTCTTTTCTAACATCCTACTTTATATTGTTTGCTTTGGCTATACATGGAAAGGAGCAAATGGTCTACAGATATGATGTAAGAGGGGAAGTTAGAACATTGTCTATGCTAATTTTTTCATTAAATAAGCCCTCCTTTCAGTGCTGCAGGCGGTCTCATCAGAAATCCAGACCCATAAGCCATCAAGAGCCATTAGGAAATCATGTTCCGAATCTAACAGATTCTCTTCTAGCCTCGGAGTTATTAAGCTGGCTCAGCCACGTTGCCAAGTACAAGATGAGGGCGTGAATAACCACAGGGATGTGAGGTTTTCTGTGGGGTTTCCTGGATGGGCAGCAGGGATTTCCCAAGAGACTTAGCTGGTTTAATGGAGGTGAGGTATATCCCTGTGGGGACTTTTAGTTTTCTAGTAGTTCAAAAGCCTGGTGGTATGGCTGGTAAGCACAAGTCAGGACCCAAAGGAGGCCTTCTGTGGTCGCTGGGAAGCCGGCAAGTGTGTTGTCAAGCCTATTAGCATGTTTTCATTGTTGAGAGACGCTGTCTGCTGCGTTTGGGCTTGCTTCTTCCCAGTACATCTGCGCATGCCCACTGAAGTCACATGATTCGAGAACTAGACCATAAAGCCCCAAGGTGCTTCCCATGTCCCGCCTACCTATAAGACAGTCAACAATCTGGTCCCTATCACAGAAGGAACCTAAAGCCTGGGGAGGTGGCTGGATGCTAGGCAGACCTAGAGCTTCTATGTAAAGGGCTTTGCGTGGGAGGCTGGGAACTGTTTGCTCGAGTTCGGGAGTGGTGCCCCTGCAGACGCCAACTGCATGCTCAGCTTGCACCTGCTCCTTTCTGGCTCCTGACTCTGGACTGCCTCTGCATTCCTAAGCTGTCTGTTCATAGACCGTTCCCTGCACCTGTGCTGTGCCCTCCTGCCAGATACCTGGCAGTTCAGGAAGGGCACAAGCGCAGTGCCCAGTGCTTTACCTTCTTAAGTCTTCGTAACGTGGTCATTGGCAGGCATGAGTTCAAGCAATACCGCTCAGGCTCTACACTTAACCTGACACAGGGTGTGGGGCTAAGCTGGTAGAGCGGAGAAGGGGTTCCATGGGTGCCGGGAGGCACTTGGCCTCTGGTAGGATGGAAAGAGTGCAAAGGAGCCTATCTTCCATTCCCCTCCTGACCCTGCCTTCCTATCCTCAG
Seq C2 exon
CCCCAGGACGAACACCTGAGCAACTTCTGCCGCCTGCTAGGAATAGAGCACAGTCAGATGGAGCACTGGCTGTGTCATCGGAAGCTGGTCACCACCTCCGAGACCTACGTCAAGACCATGTCCCTGCAGCAAGTGGTCAACGCACGCAATGCCTTGGCCAAGCACATCTATGCCCAGCTGTTCTCCTGGATTGTGGAGCACATCAACAAGGCCCTGCAAACCTCCCTTAAACAACACTCCTTCATCGGGGTCCTGGATATTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104:ENSRNOT00000019512:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]