MmuINT0104467 @ mm10
Intron Retention
Gene
ENSMUSG00000025885 | Myo5b
Description
myosin VB [Source:MGI Symbol;Acc:MGI:106598]
Coordinates
chr18:74638042-74644192:+
Coord C1 exon
chr18:74638042-74638151
Coord A exon
chr18:74638152-74643926
Coord C2 exon
chr18:74643927-74644192
Length
5775 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CCCTGTCTTCCTTTCCTCAGCCC
3' ss Score
9.65
Exon sequences
Seq C1 exon
GAGTGCGGGATTCCCATCAAATAAGCATCTTTAAGATAATTGCTTCTATCTTGCACCTGGGAAGTGTGGAGATTCAGTCTGAGCGGGACGGGGATTCCTGCAGCATTTCA
Seq A exon
GTAAGTGGCGCCAGACATAAGATGTGCACAGTCAACTCGGACCCTCCAGCCTGATACCACGGGCATTAGCCTCCGTGCTTAGAGGGCACCCCTGGGTTATTTATTCTAAGCAGTAATGACTTCTGTTTTCTCGCTGATAATTTTTTTTTAAAGAACCAATTCATTTCAAATCGGCTGCCTTCAAGTTTCTATCACTGGGGCAAAGGGTTTAGTGGCCAGTCAATAAATTTGTCTGATGGGTTTATTTTCCAAGTACTCTGAGGTACATAGACTTCTACGACATGTCATCAATCTATTGAGTACCGCGTGGGCTCCAGGCTGATGAAGTCTTTGCAGCAAGCAAACGGAGGGTTGGACACCATAGTTGGTGACTGCTTCTGAAGAGCTTGCGTTCTAACCCGGTAGCCAGGACGGGGCGGCACTGATGAACCTTTTCCCTGTAGAAGACAGGATATTAAGTGAGGCCTCTCAGTCAAGGTCCTACCAGCTCTGATAGGTCCTTAAAGGCTCCTAAAGGTCTCTTTTCCCTAGAGCCTAGTGTCACAGATGACATGTAGTAGACAGAAAGTGGTTATGTGGGATAAGGATGCTGGAGAGAGCTTATGTTGGTGGGACAGACGGCAGTTTCTATCTATCTGTGTCCTCTCTGAAACTCAATGCTGTTGGCCAGAGCTAAAACTCCACTCTGGCCTTGTATAAGTACATCTACCATGGTTTTACTTCTGTGCCTATCTGTGGTTAGCCTCATAGGAAGCACCAGTGTGATTCTTATTTTTCGCTCGGGATGTGAAATTTAAATAGCCAGATTCTAGGAAAAGGACACATATCACTAGAGAATTCAGATGCATGTGTGTCCATTCCAGCCACAAGCACAGCCATTGCCCTTCCCACTTATGGCCATTGCTGTCTGTGGAGGACAAGAGTTAGCAGAAGTTTAAAACGTTCCTACCTTCAGGGAAAGGAAGATTAAAGCTCTTTAGGTTCAACAGAGCTCCTCTCCAACCTGCCCTCCATCCCCACGTGAGAGCTTTGAGGTTCCCCCCTTACAGCTGAGAAAGGTACAGATTCAGGAGCCTGCAGTAAGTATCCCAGAGCCGTCTCTGACATCTGACATTCACAGATTGCTGTGTATGTGTGTACCGTGGGGTGGCCAGAGCCTACAGGCGTAGTAGAGATGGCAGCCATAATGCTTTGATGGTCAGGACAAGTAATCTCCCTGGTGAATACAAGTCCTAGCTGACACTAGCGGTGAGTGTTTGAGGCTGGTGAAGAGTTGGCCTTTTGCCATAGGGAGAAAGTGTGCAATGTTTATGCCTCCCTTCTGTACACCCCTTCCTAGAAAATGCCCTATGTGTCTTTAGGAAAGCTGTGTCCTGCAAGGGAAGGACAGGGAAGACTGGGAGGACACGCATTGACAAATCCCTGGCTTTGGCTGGGGACATGCAAGAGAGGTGACCAATATTTCCTTAATCTCTAGCCACGTACCACCCCTCTTCTTGCCAGTGGTCTCAGAGCCACACTCCTGGTCACGGAGCTTTTGTTGGGTTGTTTTTGGTGTGTGCATTGCTGGAGGTCAAGGCTCAGGCTCCACAGCACACTAAGCCTCTTTGCTGTGCATTCTCACAGCACTCTAAGCCTCCCTTGCTACCAAGTCTCAGCACAATGATTTTGCATTCCTTGTGTGATTATATTCTCTTTCTCTCTCTCCCCCTCTCCCTTCTTTCTCTCCCTCTCTTTTTCCTTCTTTCTCTCCCTCTCTCTTTCCTTCTTCCTCTCCCTCCCTCCCTCTCTCTCCCCCTCTCCCTGTCTCTCTCCATCTCCCTCTCTCTCTCCCCATCTCCCTCTCTCTCCCCCTTTCCCTCCCCTCTCTCTCTCCCCATATCCCTCTCTCTCTCCCCCTTTCCCTCCCCTCTCTCTCTCCCTGCCCCCTCCCTCCGCCCCTCTCTCCCTCCCTCCGCCCCTCTCTCCCTCCCTCCGCCCCTCTCTCCCTCCCTCCACCCCTCTCTCCCTCCCTCCACCCCTCTCTCCCTCCCTCCCCTCTGTCCCTCTGTCCCTCCCTCCCCTCTGTCCTTCTCTCCCCTCTGTCCTTCTCTCCCTCTCTCCCTCTCTCCCTCTCTCTCCCTCCCTCTTTCCCTCCTCTCCTCCTTTTCCAAACTGAGAGGGCAGTAAGTCTATGTTCTTAGTCACCTCTGCAGTATGCATGTCCCAGTAGGCACTCTAAAATGGATAGCTGGTGATTCATTGAGGCTGTCTAGGCTCCGATGGTAATAAGAATGGACGCCAGTGTGGATGAGACAGAGCTCAGTGGGTACCACTGAGGAAGCAAAGCTCTGAGCACTGTACCGGAGGACCATGGCCACTTTTTTAGAAAGTCCAGCCTTGGGCTTGTAGGTACAGTGTCACTGATAGTCCTTCACTCCTGGGCATTCAGACGAGGAGCAGGGGTCGGGGGAGTCATTGTCACCAGTGCCTGTTCCCCACCACTACCACTAAACTGTAAGGCCACACCTATTGTGTTCTGCTTGATATACTGTGTCACCTGTATTTGTGAGGTCTGCACAAAGATGGGACCATCAGGTGAGAGCTGAGATGGCCTGAGATGGGAGGCTTGCTAGCATGGGTTGAAGGTCTAGGCTGTGGGAGTCATGACAGCATCAGGGTTGCCAGGGTTCAAATCCCGACCCCACCATTTCTCAGGGATGTAACTTTAGAGACGCTCCCTCCCCTCCCTATGTCCTTTCCTCCTCCACACACTGTGAGTGGAAAGAGAACAGAGCCCTGCAGGAAGGCCTTCACTCGGAGCTGATGGTGCTAAGTTCTAAACCAGTACCATTCTGGTTGTTGGGGCCAGAATAGACCTTAAGGACCTGCCTCTCCCTACACAGAGCAACACCTAATAAAGACCAAGTAAACCTAAATAAAGCCCACAGAGAAGAGCCTCTTTCTTAAAGGGCAGGATGACTAATGTCCCTGCCAGGACAGGCGCAGGCTGGTTCTATTCCCGTACCACTCCCTCTCGCTTACTCAACTGAAATTTTTTAGCAAAAGACTTGGGCCACACACATACCTGCCAGTGACCCAGTGGGTCCTGAACACGGTGCTCAGCCCAAGTGTGAACTTGAGAAGTCTGCCGCTGAGGACGCCTTTCAGGGGGATCCCCCGTATGCTCTGCAGGCCCAGAGGTGGGCTTGCTGTCTGCTTCCAAGCCGCGTGCCTTCTGCTCTGGAGTTTTTACTTCTAATTAAGGCATGGGACTGTGTTCCATGATTGCCAGGGCTACCTCGGAGATGAAACACTGTCCAATTAGTTGGACACCAGAGGCCATTTCTTCCCCTTGAATTTGGCAATGCAGGCCCATAAAACTGAGCTGCTGTCTTTAATGCTGAGTGTTTTAATGGATTTATCATCATCTAATTATGCTTAAATGTAATTGCATGACGTCCAATCAGTTTCTGTTAGTACCTTTAATCAACAGTCAGAAGAAGTCCCACTGTGGTGTCTAGAAACCTGTTCCCTGGTGGCTATTAAAGAGTTAGCTCCCTTACTGTGGTTCCGTCTCTGCCACACTCTAGCAAGAGAGAGGAGCGGGGAGGAGCACGAAGGGGGAGAGGGGTAAGGAGTGGGGAAGAGAAGAGGGCATGGGGCGGGGGGCGGGGGGAGGTCCGTGTTGTTTGCTGCAAGCAAACCACTCAAATGTCAGGGGATCTGTCTGTAGTGTGTGCCTAGTGATTAAGAAACCCCTAAAAATAGGTCAGATGAACAAATTGGACACTTGCCACCTATGAACTTGTTGCCTGCCAAGCAGGCTCCAAATTCTACCCTGAACAGTAATGTTATGTTGGAGCGGGCACGGGTAGGGTGGCTGCCGATGGACCCTGTGGCCAGAAGTAGCCACGACACCGTTAACCGCTTAGTGAGTGGGAAGCACGGTTCTCTGCATACCAAGCCCAGCCTACTCAAGCGGCCTGGCTTGGGGGTTCAGGGGGCTTTCCTCAGACTGACTTTCCTCAGCTGAGTAATACAGGGTGGACCAGAATGGCAGCTTCCAAGCAGGAGCCTGACCCCGGAGATGAGAATTCTTGGTCCAGATGAGTCTGAGAATTAACACGGTTAATGCTCTCTCCTGTCTGTATCCCTATCCATGGTTGGGGAACACACTGTTCTCGAGATCTGGGGGAGGGGCATTCTTTTCCAACATCCTATTTTAATATTTGCTTTGGCCAGATGGTTACGTATTGAGAGGCGCAAATGGCCCGCAGATATGATGTGAAGGGGGAAGTTATAACATTGTCTATGTTAATTTTTTATTAAGTAAGCCTTCATTTCAATGCTGCAGGCAGCCTCATCAGAAAATGAGACCCATAAACAATCTAGAGCCATTAGGAAATCATGTTCTGACTCTAACAGATTCTCCTCTAGCCTCAGAGTCACTAAGCTGACGTAGCCACTTCGCCCACGTACAAGATGAGGGCGTGATTGACCACAGGGACGAGACGTTTTCTGTGTGGGGTTTCCTGAATGGGCAGCAGGGATTTCCCAAGAGACTTAGATGGTTTAATGAAGTGAGGGGACTTTTGGTTTTCTAGTAGTCCAAAAGCCAGGCGGTACGACTGGTAAGCACAAGTCAGGACCCAAGGGAGGCCCTCTGTGGTAGCTGGGAAGCCAGTAGGTATATTGTGGAGCCTGTCTCCAATGTTCTCATTGCTGAGAGTCGCTGTCCACTAGGTTTGGGCTTGTCTCTTCCCAGCGCATCTGAACACACCCACTGAACTCACCTACGCTTTAGAGAACTAGAGTGTAAAGCACCGGGATGCTTCCCATGTCCTGCCTACCTATAAGACAGCCGCCAATCCGGTCCCTGTTACAGAAGGGGGACTAAAGCCTGGAGGCAGGTGGTAGCTGAGTGCCAGGCAGACCTAGAGCTTTTATGCGAAGGGCTTTGTGCGGGAGGCTGAGTTCTGTAAGTGGTGCCTGCGCCCTCTGCAGATGCCTCCTGCATGCTCAGCTTGTGCCTGCTACTTTCTGGCTCCTGACTCTGGACCGCTTCTACATTCCTAAGCTGTCAGTTCATAGGCTGTTCCCTTCATCCATGCTGTCCCCTCCAACCAGTTACCTGGCAGATCAGGAAGGGCACAAACATGATGCACAGCGGTTTACCTTGTTAAGCCTTTGTAATGTGGTCATTGGCAGGTGCGTGGATCAGTCTAAGCCATACCGCCCAGGCTCGACACTACCTGATATGGGGTGTGGGGGCAGAGACAGGGCTCCATGGGGGCACCTGGCCTCTGGTAAGATGGGACGTGTGCACAGGAGCCTATCTCCCATTCCCCTCTTGTCTTAGTCAGGGTTTGCATTCCTGCACAAAACATCATGACCGAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACACAGGGAAAGAACCTGGAAGCAGGAGGTGATGCAGAGACCATGGAGGGATGTTACTTACTGGCTTGCTTCCCCTTGCTTGCTCAGCTTGCTTTCTTACAGAACCCAAGACTACCAGCCTAGGGATGGCACCACCCACAAGGGGCCCTTCCCCCCTCCCCCTTGATGACTAATTGAGAAAATGCCCTACAGTTGGATCTCATGGAGGCATTTCTTCAAGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGATGCACCAACCCAACCAGTACACCTCCTGACCCTGTCTTCCTTTCCTCAG
Seq C2 exon
CCCCAGGATGAACACTTGAGCAACTTCTGCAGCCTGCTAGGAATAGAACACAGCCAGATGGAGCACTGGCTGTGTCATCGGAAGCTGGTCACCACCTCAGAGACCTACGTCAAGACCATGTCCCTGCAGCAAGTGGTCAATGCACGTGATGCCTTAGCCAAGCACATCTATGCTCAGCTGTTCTCCTGGATTGTGGAGCACATCAACAAAGCCCTGCACACCTCCCTTAAGCAGCACTCCTTCATCGGGGTCCTGGATATCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025885:ENSMUST00000074157:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types