HsaINT0108831 @ hg19
Intron Retention
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:7603]
Coordinates
chr18:47500720-47506923:-
Coord C1 exon
chr18:47506814-47506923
Coord A exon
chr18:47500986-47506813
Coord C2 exon
chr18:47500720-47500985
Length
5828 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ATCTCCCCCATCTCCCACAGCCC
3' ss Score
9.43
Exon sequences
Seq C1 exon
GAGTGAAAGAGTCCCATCAGATGAGCATTTTTAAGATAATTGCTTCTATCTTGCACCTTGGAAGTGTGGCGATTCAGGCTGAGCGTGATGGTGATTCCTGTAGTATATCA
Seq A exon
GTAAGTTGCACACCAACACCGGAGATAAAATGAACACAATTTACCCTGTTCTTTGATATGACTGAAATGTGTCTTTCCAGTTAGAGGACACTCATAGGTTATTTATTCTTAACAGTAATGGTTTCTGTTCACTTGCTGATAATTTTTTAAAAGAGCCAACCCTTTAAAAATCAGCTGCCATCAAGTTTCTGTTGCCGAGGACAGGGAATGTAGTGGCTATTTGATAAATTCTTTTTGTTGGGTTGATTTCCCAAGTACCCTGAAGTACACAGAATTCTACTTGTTGTCAATCAATTGAGTACTTTCTGAGTGCCAGACTGAGGTCCCCACTGCAAGGAGATGAAAGGGCACAGGGCACTGTACCTGGTGATGCTTCAAAGGGGCTTATAGTCTAATTGGGTGGACAAGACAGGTGGCAACCCTTGCCAAGATTCTGACAGCACAAGGCAGGCTGTTAAGTGAGACACACATGTGAAAGTACTGCAAGCTGTCAAGTGCTCCGTGAAGGCTCATAATGAAGGTTATTTTCCTGATGCCCAATGTAGTACTGATATGTGGTAGGTAAATGTCTAAGTGGATGGACGGGTGATGGAGTAAGCACCAGGGAAGTGGCACCCACAGCAATTGCTGTGCCTTCTGGAATTTAATGGTGTTGGGAAAAGCTAAAGCTGGTATTCTAACCTTGGATAGGTGAATCTGCAACTGTTTATTCTATACCTCTTATGCCCATTTATGGCCAGGTTCTGGGGAGGTACAAAGTATGATTCTTGCTTCCAGGGACTTGGAATTTAAATAACCAGACACTGGAAAAATACAAAAGACAACACTACCTGAGGGCACGTGTCCATGCTGCTCACAAGCTAATGCTTATTCAATTGAGTGGACGTAAATTAACCTCCTTCTGTTTGTCTAGAGTTGGGGGTTATGAGAAGTTCAAACTGGCCCTGTCTTCAGGGAGAGGAAGACCTGAACTGTAGCTGGGATTCAGTAGAGCTCATTGTGTATCATCCATGGATGGATACACAATCTGTGGGGAATGATCTAGGGTTTGAGAGGGCCCCTGGGCCTGTCTGGCCTGCTGCCATCCCTGGCATGGACTCTGCAGCCTCGTGAGAGCCTTGAAGCTCCCCTGTCGGGCCCAGTGGAAAAGGAGGAGGTGTTGGTGCTGGTAGCGTTAGGTGCCCTGGAGCTGTTTTGGACATCTGCTGCTTATATACCTGTGTGGGTGCTCACCTTAGGGGGAAGGAGGGCATGGTACAGTGGAGTTGGCAGCAGTGATGCCATGAGAAGGACTGTCATGTTCAGAGGAGGACCTGTGGCCCAGGGGGTGGTGGAGGAACCTCCAGTGCAGGACAAACCTTCCCGTAATCTGAGTCTTCAGGGCCAGTGATGTATTGTCCCAGTGTCTTTCCCCTGATAAGAAAGGCATAGAGCATCTGTGCCTCCCCATGCATACAGCTCAGTCAATGTCCTGTGGTTCCTCAGGGCAGCTGTACTCTGTGTCAGGGACAGGTGAGATGAGGAACACCTGCAGTGACCAAGGCCTGGCTGAGGCTGGTAAGAGGCAGGAAAGGTGACAGATGTGCTCTGTGGTCTGTGGACCTCCAGCCCGCCCAACACCCTGCTCCTCCCCAGGCCCTTCACAGGTCACTTCTTCTTTCATGGGTTCTTACCTCTCCTCTGTGGGGCTGAGCATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTACTTGCTGCCTACCTTTCTCCTTTGTGACACTCCAAACTCTGAAAGAGTAGGGTCAGTTCTCGCTCTTTAGTCTATCACCAGCATCTATTGTGGTGCTCAGCACTCACCAGGTACCCAAGAAGTAGATGGGTGGATGACTGAGGCTCTCCAGGCCTCAGGGGTGGCACACAGGAGAGTAAGAGTGGATGGGCAATTCTGAGATCTTAGTGAGGCTGATGGTTAGCATGAGAACCAGGGCTGGGGAGTCCGTGGACACCTACCTGCATTGGGGGGCGAGACCAGCAAAATTAAGGCTTAAGCCTGTAAGTGAAGTGTCTCTGATCTTATAGTTGACCCTCCACACCCAGCCTCCGGAGAACGTTCAGGTGAGAAGGGAAGTGAGTGTTTATTAGGACTGTATCTGTTGGGCTCACTGTTCTCCCTCTAGTACCCACTGAGTGTTTGTGTGGAGATAGTATGAGGGTGGGAACATCAGGGCCTCTTAGGGAGGCATGGATGGAGGATGCAGGTGGTAAAGGGGGCAGGAGGGAGGAGGCCTGAGAGGTTGAGGTTTGGATGCTACCTGGTGTGGCAGCCCTTTCTCTGCTAGGCGGCAGGAAGTTCCAGAAGGCATTTGAGTGCAGGTTTGTGGTCTAGGCTGGTCTTCCATTGTTCTGCAATCAGAGCTGTACAGAGAGCTAGTGGACAGCAAGGACTCTAAGTCGAGATGGCCAAGGTTCATATCCTGATTCTTCTTGCTGGATGTGTGACTTACGGCAAGTGTGCTAACCTCTCTGTTTCCTCTTCTGTAAAGTGTGGATAACCACCTGCCTCAGGGCTGGAGTGAAGATCCCAGAAAGCCCTGTGTGGAAAGGTTTTAGCACAGAGCTCGTGGTTGAGAGAGTCTTTGTCTAATATCAGCCTTGTTATAGCCTGAGTGGACCTTAAGAGCATCCCTCTTGCTGTACAGGGGAGGAAAAAATAAGGCCCAGAGAGGGGAACCTCTTTCTCTGAGGTTAGAATGACAATGGCAAAGGTGGGACAGGGCCCAGGCAGTGTTCAGTCCACTTCACTCCTGCCAGCCTGGCTTCCTCGGCTGGACTACAAGTCCTTGGGGAGGAGACTGCCCTCTGCTTGCCTGGTGAGCCCCATTGGTGCCCTCACAGTGCCAGGCACAGAATGTGTGCTTGAGAAATGCATCGTTAATAGTTGCTACCGAGAGCCCCACTGATTGTGGTTTATTCCTCGGGCACATAGGATGGAGCTTCTATTGGAAAGGCTGTCTTTCCATACGCAGTGTGCCTTCTGCTCAGTAGTTTTTATTTTTAATTAAAGCATGAGAATGTGCTCCATGACTGCCAGGGTTGCCTTGGAGATGCAACAGCATTCAATTTGTTTCTTGAATTTAGCAATATGGGCCCATAAAACTGATCTGCTACTTATTATATTGGCTATTTTTAATGGATTTAGCATCATTTAATTTTGCCTAAATGTAATTGTACGATGTTAAATCAGTTTCAGTCAGCACCTTCAATCAACAGTCGGAAGAGGGTGAGAAAATCAAGCCCCGCCCCACTGTGGTGGTTAAAAGCCGGTCCCCAGGGTGGTTTCTCAGACAAGTCTCTAACTTGTGCTTTCTCCACTGCACTCACAGCGCGAGGCCTTAGGCAGGGGAGGGTGCCCGTGGGCATGTCTTGGGCAGTCATGGTAGCTGCTGGCAGGCCACTTAAATGTCAGGGAATCCATCTGCAGTGCCGTGCCTAGCAATTAAGAATTTCTTGGAAATAGGTCAGATGAACAAATTGGACGCTTGCCACCTCTGAACTTGTTGCCTGCCAAGCGGTCCCCAGGCACTTAACTCTACTACATATGGCTTTATGTTTAGGGGAGTCGGGGAGCAGGGGAGACAGGTTGGCTTCAGAGAAAAAGGATCTTGGCCAGGAGAAGTAGCCATGGAAACTCTCTGCTGAGTGTGAAAAGATGGGGGCTTCTCCACACCCACCCGGCCCAAACCAAGCTGATTGTCCTGCAGGGCTGGGGTTAGGAGCTCTGGGCCAGAAGGCAGGAGGCCTCACTCAGCTTCATCTGAATAGTAAGGGACATCGGATTAGAATGCAATTTCTTAAGAACATAAGCATTCTTTGGTCAAATACATTCCAAAAATGCTTCTTAAAATATCTATCTCTTGGTGCTACATGGTGTATTAAACCAGTTCAGCTGTGTTTAACCTGGTCCTATCCTCTCCTTCTGTTAAGTAAAGCCAACTAATGTTCTTTGCAACTACTGTTCCATAAACCATACATTGGAAAAACACTGGCCTTAGTGATTTTGGATTCTATTATTCTGGCGTTCTATTATTTTATAACTGTTTTGGGTAGATGGATTTTAAATATATGTAGGAGGAAAAAATTGCCTGGGGATATGGTGTTAAGGGAGAAATAATACAGTTATCTGTGTTAATTTTCATTAAGCCCTCATTTAAATCCTACAAGTCAGCCTCATCAGAAAATGAGTCCCACAAGCAATTGAGGGTCATTAGGAGATGGCACATCATGTTCTGAAGGATTCCCTTTCAGCCTCAGCGTTAATAAGCTTTCCAGCAGGCTTGAGCCTGGGCTACCAGCTTTCCCAGGTGGATTCAGTTGAGGGAATGAAAAACAGGTGAGAGAATGAATAACAACGATGAGCAGGTTTTCTCAGAGTGCCCCAAGTGGGCTGCAAGGATTATCCAAGGAATTTGTACATTTTGGTGAAAGAAGACAAGACCCTGTGGGAAATGTGGCTTTCCAGTGACTCAAATGTCAGGTGATGTGATTGGTATTTGGGTAAATGAGGGTCAAGACTCACACATAGTCAGTAGAGGCAGCTGGGGTAGGCAGGAGATACATCGGGCAGGACCGTGGTAGAAGCCTTGTGCTGGGGGTGGGGCGGGGGCCTGGTTGAGTAGTTGTACCTCTCTGGGGCTCAGCTCAGCTTTTTGCCTGTAGGAAAAGAGGCCTAAACTGGAGGAATTCCAGTTTCTTTCCAGCTCTGAGCATGTGTGATATTATCAGTGGAAGTGTTCCAGATGATCTTCCCAGGTCAAGATGTGGTCCAGGGGTTTGCCATGTATCTTAGCTTTCCACGCTGAGGAACTTTGTTTACATACTTAAAACGCTTGCTTCTTGGGGAAAAAAAAGTTCAGTTTCTATGATTTTAGCATCAATGAGGCTAAGAAGAAAGCGAGCCTGCTTGGAAGCATAGGACAATGCAGGGTCAGTGCTGGGAGTGACATCGTCTATTGCGTTTCAGCCTCTCACCCAGCACATCTGAACCACTCACTGGTATCATATACAATTTCAGAAACTCTTCAAGGTGATTCTCACTTAAGCTACCCACCCAGAAGAGAATCATTGATCTGGCCCATCATGTTATTTTACAGAGTAGGGAACTGACTTCTAAGGGAGGAACATGGCTAGTGCCTTCGAAGGGCCCATCCACCTTAGGAGCCTGGGGCTTGTTTCTGAGCATACAGCTGGTTAGATGGGTCGGGTCAAAGGCAATGCCTGTAAGGGAGGAATTCTAAGAGAGAGGAAGAGAATTGCTTTCTGGGCTGTGGGTCAAGCACTGCATGCATACCTCAGCAGATGCAAACTGCATTTGGTGTGAATGTGTTCGTTACTCCGAATGGATTGCATGGTCATAAGCTCTCAATTCTCTTTCTGCTCCCTTCACTCCAGGACCTGCCTCTTACCAGTTACTCAGCAGCAGCCTGGCATGGAGGGAGGGGACAAGAAAGATGGAGAATGTTTTGGTTTTTAAAGTCCTATAATTTGGTCATTAGCAGGTGGAATGACCAGTCTGAGCATTGCTCTCTTATGGGCTCTGTCATCTCCACTTAGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGAGAGAGACTGCTGGGCTGGCAGCAGGGCATGTGCTGGGATTCTGGAGGGCTGGGAGGCCTTGAGTTTGGCTTGTTTTCCCTCTGGGCAGGAGGGTGGAAGACATTGGTGGGGGGCGGCTTGTCTCCCACACTCCTCCTGAACCTATCTCCCCCATCTCCCACAG
Seq C2 exon
CCCCAGGATGTATACCTAAGCAACTTCTGCCGACTGCTAGGGGTGGAGCACAGTCAGATGGAGCACTGGCTGTGTCATCGCAAGCTGGTCACCACCTCGGAGACCTACGTCAAGACCATGTCCCTGCAGCAGGTGATCAATGCGCGCAACGCCCTGGCGAAGCACATCTATGCCCAGTTGTTCGGCTGGATTGTGGAGCACATCAACAAGGCCCTGCACACCTCCCTCAAGCAGCACTCCTTCATCGGGGTCCTGGACATCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-MYO5B:NM_001080467:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)