DreINT0100912 @ danRer10
Intron Retention
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22460405-22464278:-
Coord C1 exon
chr21:22464169-22464278
Coord A exon
chr21:22460671-22464168
Coord C2 exon
chr21:22460405-22460670
Length
3498 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATCTCTTTTTGCACATGCAGAGG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTGTAAAAGAAAACCACCAAATGAGCATCTTTAAGATAATTGCCTCCATTTTGCACCTGGGGAACGTGGAGATTGTGCAGGAGAGAGATGGAGAATCCTGCCATATCAAT
Seq A exon
GTGAGTGCACAGCAAATAATGCTATTGTAAATCAGTCCATTAAGGGTTTTCACAGGAAAAATTTAATACGATTTTTTGAAACTTAAGTGATTAATTATGGGGAAAGTTTTAGCTGTTTAGTTTAGGAAAACCTATATATATATATATATATATATATATATACATAGGTTTTCCTATATATATATTGAGGGGTTTTCCCCTCAAGTCTACAGACATATGCTACAGGTGAATTGGGTAAACTAAACTGTCCGCAGTGTGTGTGTGTGTGTGTGTGTGAATGAGACTGAATGGCTGTTTCCCAGTGATGGGTTGCAGCTGGAAGGGCATCCTCTGCTTAAAACATATGCTGGATAAGTTGGTGGTTCATTCCGCTGTGGCGACTCCTGATTAATAACGGGACTGAGCCGAAAAGAAAATGAATGAATAAAGAAGCATTCTAAAGTCGGTGACACTGCTGACATTATCTTAAAGGGTCACAAAACACCAAAACACATTTTTTGAGCTGTTGACAGTCATATATGTGTCCCACACTGCTAAAAACACTATTAGGACACCTATATTTCACTAAAAAGTGTAAATTGGTTGTTTTTGCGTTATTTCAAGCAAATTCGTACTACCGGTTTGAAACGAATTTTTGAAGCTGCGTCACGGCCATGACATAATAGCGTTGTATTCCAGCATGCAGACTGGGCGTCTGTGCCAGAGTGAGTTTTATTACGTCTTACAGTGTGATGCATTAATGCATGAGTAAGGCTTGGTTCAAACCAATCAGCGCGCTCTATTGTGCAACTTCATTAATATTCATTACTGTCACAGTGTAGATGGCAGAGACGCCACGTTGTGTTGGCAAAAGAAGCGTGAAGTGTTGCTTTTAGAGTTTGCTGCAGTAAAGTTTCGTTTTCATTTTCTCTCTGTGAGAGCTCAGACTCACGCGTGGATTAACAGTGTACGCAACGCGCGACAACAATAACTTACGTGTCTAAGGAGGATTATTGTTTACCTGAGAGCTGTTCTCATCTGCAAACGCTGAGATCCAGATTCGCTTTAGTCTCCTCTTAATAAAGACGCGGCTCTAGTTGCTGGTGATTGTCCTGTCTCTACAGATTTGGTAAGTGAGCGACCAGTGCTCTTTGTTTATTCAGTTCGTATTTTATTCGTATCAAACAAACTATTGCAACGAGTGTAAACAAGTTAGCACTAACAGTTACAACCAAACTATAACCTCGTGTTGGATTTTGTGACCGGAATAACACACGCGGCTTTCTGACACTACCTGCCGTGTGCATCTAAGTTTCTGGGAAATGCTGAGTTTTTTTTCTCTCATTCGCCGTGCGGTATCAAACATTGCATGAAAAATACATGCTTACAGCAGTTCCTCGAATCAAATATCACGTTTGTCGGGAGGGACATTAATGAATTCCCTGAATGAAAGAGCCAAACTGCAGTTAAAGTCCACCATTTAATAATCTGGCAAATAATTCGACTACAGATGTCCATGTAAACACAGTCACATTGTCCGCTGTGGGTGTGTGTTTTGACTCTGAAATTCAGCGCGCCCAAATAAACACTCCGATACCAAGCCTGTTTTCTTCCTCCGACACTCCCCCCTAAACAGAGCTGGACACGCCCACTTTTCTGACTTTTTCCAAAGTAGAGGTGTGAAAACACCCTGCTGAAACGAGTGGGTTTCATGGCCCTTTAAATAAAGTCTTAGGCAAATTGTAATTTGTGGTCCTCCGTGTTTAATGTGGTTTAAATGTTCAGTCCACTTACTGTATTCCTTGAGATTCTTGAAATAAAATAATTTTTACAAAATAAAAAAACTCTCTTTGGAGTGGACTTTGAGATTTATAACTATGTAGATCTTTTTATGTCTAAACATACATGCTGCACACTGTCTAAACTTTAAAAAAGTGAAAACGTATAATAGTACCACTATATCAAAGTATTGTTCATTTTGCAGAAATGTACAGTTATTACATTTACAATAAAATATGGAAGTCTCCACATTCTCTTAAACAACATCATTGGATTCTAACTTGTATTGATATTGTGTATCTGGAAATGTCTTCTCACATCCTCACATCCATGGTGCAAGAGAGCACACCATCCGACTTTAGCCACAAACTTTGAAAAACATAAAGGTTTACAAATTTGACTTGAAGAGACATCAAAAAGCAAAAAACTTTAGGTTCCAGACCCCATAATAATAATAATTATTATTATATTTTTCATAAATTAATTAATTTTTTCCCTCTTTTTTATTTTAATATGTTTTTTTTCTCTTTTCATAGTAATTGTTTAAGGTTCCCTGTTTGGGCTTCTAATAACTTTTCTTCATTGTCTTAGACCTCTTTAAGCATGGTTTTAAATATCTTAATCTTTTTGTTTATTCCTATTCTTTTATTTATTTATTTTAACTGGCTTAACCCTTTACCCTTACTTAACCTTTAATACAGATTTGGTTTGTTGCTTTTTTGGTTTGGAAATTAGTTTTATGTGTGTGTATGTGTGTATATGTGTATGTGTATATGTATATCTGAACTCTGAAAACTATACTGCACTCATTTCAATTTACTATAATATTCTTTGTGAAGCTGCTTTGAAACAATCTACATTGTAAAAGCGTTATAGAAATAAAGGTGAATTGAATGTGTATATATATATATATACATTACACATACACACACACACTTCGGACAGTTTAGTTTACCCAATTCACCTGTAGCATATGTCTGTAGACTTGAGGGGAAAACCGGAGCATCGGTAGGAAACCCAAATAAGCACAGGGAGAACATGCAAACTCAGCTGACCCAGCCGGGACTCGAACCAGTGACCTTCTTGCTGTGAGGCGACAGTGCTAGCCACTGCGCCACCACACCGCCCTAGAATGCTTTTTATTACAGTTTATTCATACAATACAATACTGCACAGTGTAGACTGTGATTTTTAGCCCCCAAAATTTGTTAATATAATGTTACCACTCTTAAAATATCTTGTGATATTCGTGCTTGGAATATTTCTGCAGAATCGTCTTGATCATTATTTTCAGGATCTCAATCGGGCTCAAATTTATATGGCAGTATTCGCGGCATGCTTAATTATACTGGAGCAGACAGAACTTACTGCTGTGGCCATAGGCGGGACAGCACTGAAACACTGTCCAAGCTATTCACCAATCACAACACACTGGGAAAGCTAACCAATCACAATACGTTTTGTATTTCAAAAGGTGTGCCTTTATTAAACCCAGAATTAACTGAGCCTTTTGTGAAAAGCAATACATTTTGCAAACCACTAAGCATGAACCACTCCAAAACAAAATCAAGACTTTGAAAGAGAGCATAATAAGACAATGGTAATTTGTGACTTCTTTAAAGCGGCTTTGAAATAAAATTTCACGAAAAGTTTAATGCAAATATATTAAATTGAACAATCTTGTTGTTTGTTATTTATTTTGCCACTTATGCATTAAACAATCTCTTTTTGCACATGCAG
Seq C2 exon
AGGAACGACACTCATCTGCATCATTTCTGTCGGCTGTTGGGGATTGAGCAGGAGCAGATGGAGAACTGGCTATGCCGCAGGAAACTGGTGACCACTTCTGAAACTTATGTGAAAAACATGCCCCACAGCCAGGCAGTCAATGCCCGAGATGCCTTGGCCAAACACATCTATGCCCATCTGTTTGACTGGATCGTGGAGCACATCAACAAGTCCCTGCATACTTCCACTAAACAGCACTCATTCATCGGGGTTCTGGATATCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003:ENSDART00000166835:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]