BtaINT0009155 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:105915436-105916013:+
Coord C1 exon
chr11:105915436-105915565
Coord A exon
chr11:105915566-105915777
Coord C2 exon
chr11:105915778-105916013
Length
212 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGCCCGCCGCCTGCCCGCAGCCA
3' ss Score
9.24
Exon sequences
Seq C1 exon
GCCATGCGGACGCTCAGCTGGAAGCACACCCTGGGCTTGGTGACAATGGACGTGGAGCTGGCTGACCGCACCCTGTCCGTGGCGGTGACCCCGGTGCAGGCTGTGGTCTTGCTGTATTTCCAGGACCAAG
Seq A exon
GTGAGCTCCCCAGCCGCGCCCACCCCCGACCCAACCCCACCCCAGCCGGCCCCGCCTCAGCCACGCCCCCAGGAGGACACGCCCCGTCTCCCGAGGAGGGTGGGCGGGCCCGAGCGGCTCCCCGCCGCCAGCCCCTCCCCCAGGTCCTGCCGAGCTGGGCCCGCGAGGGGCACAGCGGAGCCCGCCCGCCCACGCCCGCCGCCTGCCCGCAG
Seq C2 exon
CCAGCTGGGGCCTGGAGGAGCTGAGCGAGGCGGTGAAGATGCCGGCCGCGCTGCTGCGGCGCCGCCTGTCCGTGTGGCTGCAGCAGGGCGTGCTGCGCGAGGAGCCGGCCGGCACCTTCTCGGTAGTGGAGGAAGAGCGGCCACAGGACCGAGATAACATGGTGCTGGTCGACAGCGACGACGAGAGCGACTCGGGCCTGGCCTCGCAAGCCGACCAGAAGGAGGAGGAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046416:ENSBTAT00000063443:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(32.6=100)
A:
NA
C2:
PF0088817=Cullin=PD(46.2=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGCTCAGCTGGAAGC
R:
CTGTCGACCAGCACCATGTTA
Band lengths:
298-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development