MmuINT0014908 @ mm9
Intron Retention
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25140082-25140692:+
Coord C1 exon
chr2:25140082-25140211
Coord A exon
chr2:25140212-25140456
Coord C2 exon
chr2:25140457-25140692
Length
245 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCCTATGGCTCTGCACACAGCCA
3' ss Score
5.92
Exon sequences
Seq C1 exon
GCTATGCGGACACTTAGTTGGAAGCACACCCTGGGCCTGGTGACAATGGATGTGGAGCTTGCTGACCGCACCCTGTCTGTTGCGGTGACCCCAGTACAGGCAGTGGTCTTGCTGTATTTCCAGAACCAAG
Seq A exon
GTGAGTCCCTAGAACCATATCTGCTCTGCTTTGACTACACTACCTTGGGGCTATTGCTATAATCTGATGGGCTATAAGGTAACATGCCAGATTCCCCAGCCCCCAGCAGAGTGTAGGGGTAGCAACCATTCTTTTTACCTATGAGTTACACAGGACAATCCACGTGCGTCTGGGGGTCCAGCTAGCTAACAGGTATTGGAGCAGGTATAATCTTCGGTACCTGCATCCTATGGCTCTGCACACAG
Seq C2 exon
CCAGCTGGACCCTGGAGGAACTGAGCAAGGTGGTGAAGATGCCTGTGGCACTGCTTCGAAGACGCATGTCAGTGTGGCTGCAACAGGGTGTGCTGCGGGAGGAACCTCCAGGCACTTTCTCTGTCATTGAGGAAGAGCGGCCTCAGGATAGGGACAACATGGTGCTGATTGACAGTGATGATGAGAGTGACTCAGGCATGGCCTCCCAGGCTGACCAGAAGGAAGAGGAGCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965-Anapc2:NM_175300:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.291
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.2=100)
A:
NA
C2:
PF0088817=Cullin=PD(15.9=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACACTTAGTTGGAAGCA
R:
CAGCACCATGTTGTCCCTATCC
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: