DreINT0029540 @ danRer10
Intron Retention
Gene
ENSDARG00000105035 | anapc2
Description
anaphase promoting complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-081104-256]
Coordinates
chr5:53929877-53933538:+
Coord C1 exon
chr5:53929877-53930009
Coord A exon
chr5:53930010-53933296
Coord C2 exon
chr5:53933297-53933538
Length
3287 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTTTGTTTTCCCATTATTAGGCA
3' ss Score
8.23
Exon sequences
Seq C1 exon
GCCATGAGAACTCTGAGGTGGAAACCTCAGCTGGGTTCTGTTACATTAGATCTAGAGCTGGAGGACAGAACTATCACAGATCTCACAGTGTCGCCCATCCATGCTGCAATTATTTTACACTTCCAGGACAAAG
Seq A exon
GTGGGGTAAAGTAGTTCCATTCCATTATATGATAATTTGGTGCTTTAGGAAAAATGCTGTGGTTGTTTGGGTTTATCTGAAAAACATGCTAATGTCAGTTATTCTTAGTTTATAATGTGTGTTCTGTGTTGGAATGTCTGTCTATGGGCTCTATTTTAATGTTCAAAGCACAAAGTCTAACGCGCAGGGCGCAAAAGCATTAAGGGCATGTCCAAATCCACTTTTGCTATTTTAAGGATGGAAAAATAAGCTCTGCAACCCTTGTGCATGGTCTAACAGGGTTGTGCTTATTCTCTTAATGAGTTACGGGTGTGTTTTGAGCATAACATACATTAAACCAATCAGACCATATAACCAATTGCTATTTATATGGCGGACATTGTAGGTGGAAGAAAAGAATGCTTTACTAACAAAAAACAGTTAAATAGACCACCTGCAGTGAGTATAAAGAATGAACCTCCTCCATTTGGCCTCTTTACTTTCTCTTTACTTTAGTTTTACTCTTTACTTCACTACTTTACTTTTGTAAAGAAACGGTGTTGTACGCACTCCAATGTAGACATCCATTAGCCTACATATTTAATTTTGTTTGTTAAGCGCAAAGATTTGTTTCAAAACTATTTCTAAATTCAGTTCTAATTTCCAGCAAACGAATTAATGAACAATATTAACGAAGTGTGGTCAAACAAGTTCCATATGATGATTTGTACGTCTCCTAAACCCGACAGGTGTACAAATCTAAACTTGTTTTTATTAAAACAAATATAAATATGCAAAATGAATACTACTACTAATAATACCGTTATACAAATGCAAAATGAATGAGTAAACAGACAACATAAGAGCCGGATTCCAAAACCCTAAATGTCAAGAATGCATGGTCGGAGGCAGTGGTTTTTTTATATTTGTGTAGAAAATAATAATTTTTGTAATATATTAATACTTTAATTTTTTTCTTATCTAAAGATATTTGTGTATTGCAATGTGTAGGCATTTGAACCCACATAACTATCGCACTTTGCACTGGAGTTTGGTCTAGCTTTTAGTTGGTCAATGCAGCGGTCTATTTCAGTTCTTCAAAATAACAACATGCCAACAATGTGCCTTTACTCACCTCGGCAATTGATTTGCTATTTAAACAATGTGGTGCAAAACATGAAAATTAGAGCTGCCCTGGTATAAAAATAGCAACAAATACCTGCCTTGCACCTCATTGCGGTGGGTGTATAATACGCAGTGTTGGGGAGGTTACTTTGGATATGTAAGAGATTACAGATTACAAATTACCCTACGTACCCAAAGTACAGCCACCACAAAACCAGACCTTATAACAAAAAAATTGTTTACTGTTGTTACAAAATCAAAATTTTTGTTAGTTGTGCAGGGTGATTGTTGTGGCATTTGCAAAAAAAAGCTATTTTCGCAATTTTCATTTTTAAATCGAAGCAACTTAAATCCAAGTTAATCATATCTTAGTGATCAATAACACTGTCAATGAAACATACATACATTCATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCCGGGGTCACCACATCGGAATGAACCGCCAACTTATCCTGCACATGTTTTTTTATGCAGCGGATGCCCCTCCAGCTGCAACCCATCTCTGGGAAATGTCCATACACACTCATTCACACTGATACACTATGGACAATTTAGCTTACCCAATTCACCTGAACTGCATGTCTTTGGACTGTGGGGGAAATCGGAGCATCCAGAGGAAACTCGCGCAAATGCAGGGAGAACATGCAAACTCCACACAAAAACGCGAACTGACCTAGCTGGGGCTCGAACCACCAACCTTTTTGCTGTAATGAAACATTTTGAAACAGAATTGTTCAGTTAAATTATGTACTGTAAATATGCTGTAATAACAGAAACAAATTCTAGTATATAACAGCTAAAACAAATAATTCAATAAAACCAGGTGTTACACAATTAAAATACTATGATAATTTATAGTAAAGGGATATATTTAGAAATGAGCTTTATATTGTATAAATATTTACAACTCTTCATTAATAAATCACTCTACATAATGTAGTAACTATCATGAACTAATAGTAATTACCATATTTTACTTTAGCCTTTACTAGAGTAAACTATATATATAGACCTCCTCCTCCTCAGTCATCTTTCCATCAAGCAAAATTTTGTGTTAGCCTTGGCTGGTGAAATCACTGACCAGAGCGAGAGGTGGCAGTAACCCACCAAAAAGTTTGTTGTCGACCTCTGAAAAACAGGTAGAAGAAGAATTCGTCATTTTCACCGTCATATGGCTTTATTTTCATTGGCTAGACACTGGCCTCAGCTCTGTGAATGTCGGTGCTGTCACTTATTGATGATGTGTGGACGCTATTGTGCTACTTGACTAAAAAAAAAGCTTCACTACTAAAAAGATTTTTGATTTAAAAAGTAGCGACGCTACCGCCACTCTACTGATAAATGTATTTATAGCAGAATAGCACCGCTTTTATAATTGGCTTTAGCAGAAGGCATCTTGCATATCAGGCAAAGTAACAGATTAATACTATTCAAAATATCCCAAATCTTTAAAGAGTATTTTTGGATGTAACCCCATTTGTAATCTTTAACATTTTTATAAGTAACAGTAATTTAATTTCACATTTTTGTCAGTAACTGTACAGTTATTTAAATTTATTTTGTAATTAAATTACGTAATGCCGTTACATGTAAATAGTCCCCAACACTGATAATAGGTCCCTTTGTCTTGGTCTGTTAAACTCCGCCTACTATCAGTTTATCAAATTATATTTCAGCTGTGTTTTTCAGAAAACACTGCATATTTCATTTCAGTCATGAAGGCTGCTTTCATACTGTATATGCAGGTGCTGCTTAAAATGCGACCTCAATGAGTTTTTAATCATTTTTAATAATAATATAAATATTGTAATTATAAAAATTCTACGTCTCAGTCATCAGGCATGCTCGCTCCTGTCAATTTAGCAACCTATGTTGTTGTCGGAGGAAGGGTCTGGGGGAAAAGCTCACTTCAATATTTTGAATTTGTACTGCAATATCAATGTCAACCAATAGGTTGCCAGTTCTACATACTGCTATTTTCATTTTAAGGTGAACTATCCCTAAAGGTTTTGGCCTACAATAATGCAATTCCTGCAGCATTCTAAGGTTCTACAAGCTGCTAGCATAACTACCATCCACTATGCTCATGAATGATGCATTCTTGATAAAACTGTGCTTCTGAAGTGCCAATACTCTTTGTTTTCCCATTATTAG
Seq C2 exon
GCACTTGGACATTGGAAGAGTTGAGTGGGGTCCTAGGAGTGCCCCAGGAGATGGTGCGCAGGAAGCTGGCCCTGTGGCAGCAGCAGGGTGTGCTGCGGGAGGAAGCAGGTGGCCGATATACTGTGCAGGAAACCAGCACTTGCAAAGAGAGATCTGAAAGAAGTGTCATGCTTATAGACAGTGATGAGGAGGGAGATTCCAACACAGCAACACAATCTGAGCAGAGAGAAGAGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105035:ENSDART00000171159:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.346
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(7.8=100),PF0454511=Sigma70_r4=PU(36.8=31.1)
A:
NA
C2:
PF0088817=Cullin=PD(11.2=77.8),PF0454511=Sigma70_r4=PD(60.5=28.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]