GgaINT0126153 @ galGal3
Intron Retention
Gene
ENSGALG00000008625 | F1NLT0_CHICK
Description
NA
Coordinates
chr17:2194350-2195010:+
Coord C1 exon
chr17:2194350-2194479
Coord A exon
chr17:2194480-2194774
Coord C2 exon
chr17:2194775-2195010
Length
295 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTCCTCGACGCTCTCTGCAGGCA
3' ss Score
7.86
Exon sequences
Seq C1 exon
GCCATGAGGACCCTGAACTGGAAGTACCACCTGGGGCTGGTCAGCCTGGATGTGGAGCTGGCCGACCGCACGCTCTCCCTGTCCGTGTCCCCTGTGCACGCTGCCATCATCCTGCACTTCCAGACCAAGA
Seq A exon
GTGAGTGACGTGGTGTGGCACACGGAGCTGGGGGGAAGGCCACGTTGCCGTAGGGCCCGAGAGCTCCTTCGGGCTGGGGGCAGGAGCTGCCTGCAGCTTGGATCTACCGCAGCCGGAGGCAGAGCTGCAGCTCTGCAAGGAGACAGCACTCGGAAAAGCACAGCTCAGCACCCGCTGCCTGCAGGAAGGCGCTGCACGTGGCTGCCCAGCCCTGGGCCGCCTTCCTCCCCTCTTGTTAAGCCGTGGCACACGTGGGGTGGGCAGGTCCTGCAGCCCTCCTCGACGCTCTCTGCAG
Seq C2 exon
GCACGTGGACGCTGGCGGAGCTGAGCGAGGTGCTGAAGGTGCCCGTGACGTCGCTGAAGCGTAAGATGACGCTGTGGCTGCAGCAGGGAGTGCTGCGTGAGGAGCCGCCGGGAACCTTCACCGTCATCGAGGAGGAGCAGAAGGACCAGGGGGAGAAAGTCGTCCTGATAGACAGCGACGAGGAGGGGGACTCCGCCATGGCCTCGCAGGCTGACCAGAAGGAGGAGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008625:ENSGALT00000014053:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(17.1=100)
A:
NA
C2:
PF0088817=Cullin=PD(24.2=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGAGGACCCTGAACTGGA
R:
ATCAGGACGACTTTCTCCCCC
Band lengths:
298-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]