RnoINT0017207 @ rn6
Intron Retention
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2501185-2501805:+
Coord C1 exon
chr3:2501185-2501314
Coord A exon
chr3:2501315-2501569
Coord C2 exon
chr3:2501570-2501805
Length
255 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTGTGACTCTGCACACAGCCA
3' ss Score
5.71
Exon sequences
Seq C1 exon
GCTATGCGGACACTCAGTTGGAAGCATACCCTGGGCCTGGTGACGATGGACGTGGAGCTGGCTGACCGCACCCTGTCTGTTGCGGTCACCCCAGTGCAGGCAGTGGTTTTGCTGTATTTCCAGGACCAAG
Seq A exon
GTGAGTCCCTAGAACCCCATCTGGTCTGCCTTGAGCACACTACCTTGGGGCTAGTGCTAGACACTGCTGTCTGATAAGCTGTAAGGTGACATACTGACCCCCACCCCCTCCAGAATTTAGAGGTAGCAACCATTCTTTTTACCTGTGAGTAACAGTTACAGGACAATGCACATGCATCTGGGGGTCCAACTGGCTAACAGCTATTGGAGCAGGCATATCTCCAGGGTACCCTGCATTCTGTGACTCTGCACACAG
Seq C2 exon
CCAGCTGGACCTTGGAGGAGCTGAGCAAGGTGGTGAAGATGCCCGTGGCACTCCTACGAAGACGCATGTCAGTGTGGCTGCAGCAGGGTGTGCTGCGGGAGGAGCCTCCCGGCACTTTCTCTGTCATTGAGGAAGAGCGGCCTCAGGATAGGGACAACATGGTGCTGATTGACAGTGATGATGAAAGTGACTCGGGCATGGCCTCCCAGGCTGACCAGAAGGAAGAGGAGCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295:ENSRNOT00000015099:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.278
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.3=100)
A:
NA
C2:
PF0088817=Cullin=PD(16.0=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCGGACACTCAGTTGG
R:
GCACCATGTTGTCCCTATCCTG
Band lengths:
295-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]